Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2027 | ATGGAAAATTTGTTCCCGAAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTGTGTGTTTTCGATGACCCCCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCCAGAGAACTCTGCTTCAGCGGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGTAGGAGTTGAGGAGAAAGCACCAGGGACTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCGCCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCCTACCGATCTATCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGATTTCGTTGCAGATCAAAGCAGAGGTACATTCCTTTCTCTCTTTTGCGATGGCTAAATCTGCTTTGTTCCTTTTCGGAGGCAGACAAGAGATTTAAAGCTTTCGTCAGTGAATTGCGTGACAAAAATGTGTTGATTGATCGAAGCACTGAAGATGGCGATTGGATCGAGAATTGA | 1710 | 47.6 | MENLFPKGGASNPMLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDPRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRHHQDSLLLLLHQLSFHQHPLLLVKSISRQSSTVGVEEKAPGTVPTPLKAHLRPPCRPPPSPPPAPYRSIFSLSNEVPIVLSETKKLKMNRFRCRSKQRYIPFSLLRWLNLLCSFSEADKRFKAFVSELRDKNVLIDRSTEDGDWIEN | 569 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34123261 | 34133230 | - | CaPI482276_10g020270.1 | Cam10g2027 | 138690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2027 | 569 | Gene3D | AP2/ERF domain | 264 | 323 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | Gene3D | AP2/ERF domain | 172 | 230 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | ProSiteProfiles | AP2/ERF domain profile. | 173 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | SUPERFAMILY | DNA-binding domain | 264 | 323 | IPR016177 | GO:0003677(InterPro) | |
Cam10g2027 | 569 | ProSiteProfiles | AP2/ERF domain profile. | 265 | 322 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | PRINTS | Ethylene responsive element binding protein signature | 266 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | PRINTS | Ethylene responsive element binding protein signature | 304 | 324 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | FunFam | AP2-like ethylene-responsive transcription factor | 172 | 231 | - | - | |
Cam10g2027 | 569 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 86 | 357 | - | - | |
Cam10g2027 | 569 | MobiDBLite | consensus disorder prediction | 147 | 174 | - | - | |
Cam10g2027 | 569 | SUPERFAMILY | DNA-binding domain | 172 | 230 | IPR016177 | GO:0003677(InterPro) | |
Cam10g2027 | 569 | Pfam | AP2 domain | 264 | 313 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | Pfam | AP2 domain | 173 | 221 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | CDD | AP2 | 264 | 324 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | SMART | rav1_2 | 173 | 235 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | SMART | rav1_2 | 265 | 328 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | CDD | AP2 | 172 | 230 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2027 | 569 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g2027 | Cam-Chr10:34123261 | Cam11g0921 | Cam-Chr11:13512729 | 2.40E-39 | dispersed | |
Cam10g2027 | Cam-Chr10:34123261 | Cam02g2147 | Cam-Chr2:34252111 | 1.30E-106 | wgd | |
Cam10g2027 | Cam-Chr10:34123261 | Cam02g1437 | Cam-Chr2:27212324 | 1.40E-68 | wgd | |
Cam10g2027 | Cam-Chr10:34123261 | Cam04g0845 | Cam-Chr4:22670180 | 2.50E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52821 | PF00847 | AP2 | 1.60E-09 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2027 | K09284 | - | csv:101211242 | 753.051 |