Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2027 ATGGAAAATTTGTTCCCGAAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTGTGTGTTTTCGATGACCCCCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCCAGAGAACTCTGCTTCAGCGGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGTAGGAGTTGAGGAGAAAGCACCAGGGACTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCGCCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCCTACCGATCTATCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGATTTCGTTGCAGATCAAAGCAGAGGTACATTCCTTTCTCTCTTTTGCGATGGCTAAATCTGCTTTGTTCCTTTTCGGAGGCAGACAAGAGATTTAAAGCTTTCGTCAGTGAATTGCGTGACAAAAATGTGTTGATTGATCGAAGCACTGAAGATGGCGATTGGATCGAGAATTGA 1710 47.6 MENLFPKGGASNPMLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDPRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRHHQDSLLLLLHQLSFHQHPLLLVKSISRQSSTVGVEEKAPGTVPTPLKAHLRPPCRPPPSPPPAPYRSIFSLSNEVPIVLSETKKLKMNRFRCRSKQRYIPFSLLRWLNLLCSFSEADKRFKAFVSELRDKNVLIDRSTEDGDWIEN 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34123261 34133230 - CaPI482276_10g020270.1 Cam10g2027 138690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2027 569 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 Gene3D AP2/ERF domain 172 230 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 ProSiteProfiles AP2/ERF domain profile. 173 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 SUPERFAMILY DNA-binding domain 264 323 IPR016177 GO:0003677(InterPro)
Cam10g2027 569 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 FunFam AP2-like ethylene-responsive transcription factor 172 231 - -
Cam10g2027 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 357 - -
Cam10g2027 569 MobiDBLite consensus disorder prediction 147 174 - -
Cam10g2027 569 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677(InterPro)
Cam10g2027 569 Pfam AP2 domain 264 313 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 Pfam AP2 domain 173 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 CDD AP2 264 324 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 SMART rav1_2 173 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 SMART rav1_2 265 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 CDD AP2 172 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2027 569 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2027 Cam-Chr10:34123261 Cam11g0921 Cam-Chr11:13512729 2.40E-39 dispersed
Cam10g2027 Cam-Chr10:34123261 Cam02g2147 Cam-Chr2:34252111 1.30E-106 wgd
Cam10g2027 Cam-Chr10:34123261 Cam02g1437 Cam-Chr2:27212324 1.40E-68 wgd
Cam10g2027 Cam-Chr10:34123261 Cam04g0845 Cam-Chr4:22670180 2.50E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52821 PF00847 AP2 1.60E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2027 K09284 - csv:101211242 753.051