Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2032 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTCTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGACGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1188 42.76 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34163794 34166625 + CaPI482276_10g020320.1 Cam10g2032 138695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2032 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cam10g2032 395 MobiDBLite consensus disorder prediction 356 372 - -
Cam10g2032 395 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Cam10g2032 395 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2032 395 MobiDBLite consensus disorder prediction 356 395 - -
Cam10g2032 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2032 395 MobiDBLite consensus disorder prediction 31 50 - -
Cam10g2032 395 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2032 395 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Cam10g2032 395 MobiDBLite consensus disorder prediction 15 51 - -
Cam10g2032 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Cam10g2032 395 MobiDBLite consensus disorder prediction 373 395 - -
Cam10g2032 395 CDD STKc_IRAK 77 345 - -
Cam10g2032 395 PANTHER OS07G0668900 PROTEIN 25 360 - -
Cam10g2032 395 FunFam Serine/threonine-protein kinase PBS1 44 147 - -
Cam10g2032 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2032 395 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0216 Cam-Chr3:3148710 Cam10g2032 Cam-Chr10:34163794 4.60E-144 dispersed
Cam05g0685 Cam-Chr5:5961838 Cam10g2032 Cam-Chr10:34163794 7.00E-150 dispersed
Cam06g0040 Cam-Chr6:2224802 Cam10g2032 Cam-Chr10:34163794 9.20E-146 dispersed
Cam08g1389 Cam-Chr8:20176700 Cam10g2032 Cam-Chr10:34163794 1.60E-127 dispersed
Cam09g0892 Cam-Chr9:9191008 Cam10g2032 Cam-Chr10:34163794 1.10E-130 dispersed
Cam10g0512 Cam-Chr10:7600385 Cam10g2032 Cam-Chr10:34163794 2.90E-132 dispersed
Cam10g1128 Cam-Chr10:24350236 Cam10g2032 Cam-Chr10:34163794 4.40E-86 dispersed
Cam10g1496 Cam-Chr10:28680809 Cam10g2032 Cam-Chr10:34163794 1.20E-71 dispersed
Cam10g2032 Cam-Chr10:34163794 Cam11g1891 Cam-Chr11:31474564 2.60E-125 dispersed
Cam10g2026 Cam-Chr10:34104897 Cam10g2032 Cam-Chr10:34163794 1.60E-61 proximal
Cam08g1606 Cam-Chr8:22200190 Cam10g2032 Cam-Chr10:34163794 1.50E-48 transposed
Cam10g2032 Cam-Chr10:34163794 Cam02g2142 Cam-Chr2:34187682 2.60E-133 wgd
Cam10g2032 Cam-Chr10:34163794 Cam02g1431 Cam-Chr2:27090637 1.50E-160 wgd
Cam10g2032 Cam-Chr10:34163794 Cam04g0910 Cam-Chr4:23239166 3.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85523 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2032 - - - 0.0