Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2034 ATGGCTACTCCAACTGTCGTATCGGAAGTTCGTCCGCCGTCATTGGAAGCCGACGCCGAACAACCTCCCCTCTTCGACGGAACCACCAGGTTGTATATGGCTTACTATTGCCCATTCGCACAGCGTGCTTGGATTACAAGAAATTACAAGGGATTAGAGGATAAAATTAAATTAGTGCCTCTAAACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTCTACCCAACAAACAAGGTGCCAGCATTGGAACACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTCGAAGGGCCTTCTCTTTTTCCAGATGATCCTATTAAAAGACAATTTGGTGAAGAGTTGCTAGCTTATACCGATACGTTTACTGGGGCAGTATACCCTTCATTTAAGGGTCCTCAATTTGATTACTTGGAGAATGCTCTTCAGAAATTTGATGATGGCCCATTCTTTTTGGGTCAATTCAGTGGGGTGGATATTGCATACATCACATTTATTGAAAGATTCCATGTGTTCTTAAATGAAGTTTTCAAGTATGATATCATAGAAGGAAGACCTAATCTAGCTGCATGGATTGAGGAGTTCAGTAAGATTGATGCTTACAAGCAAACAAAATATGATGCTAAAGCGATTGTTGAACTCTACAAAAAGCGCTTCATGGTACGACATGCTTCTTAA 702 40.31 MATPTVVSEVRPPSLEADAEQPPLFDGTTRLYMAYYCPFAQRAWITRNYKGLEDKIKLVPLNLQNRPAWYKEKVYPTNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDDPIKRQFGEELLAYTDTFTGAVYPSFKGPQFDYLENALQKFDDGPFFLGQFSGVDIAYITFIERFHVFLNEVFKYDIIEGRPNLAAWIEEFSKIDAYKQTKYDAKAIVELYKKRFMVRHAS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34191771 34195513 - CaPI482276_10g020340.1 Cam10g2034 138697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2034 233 Gene3D - 106 231 - -
Cam10g2034 233 PANTHER GLUTATHIONE S-TRANSFERASE L1 6 231 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Cam10g2034 233 SFLD Main (cytGST) 30 204 - -
Cam10g2034 233 SUPERFAMILY GST C-terminal domain-like 104 227 IPR036282 -
Cam10g2034 233 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Cam10g2034 233 Pfam Glutathione S-transferase, C-terminal domain 143 201 - -
Cam10g2034 233 Gene3D Glutaredoxin 2 105 - -
Cam10g2034 233 FunFam Lambda class glutathione S-transferase 106 230 - -
Cam10g2034 233 FunFam Glutathione S-transferase L2, chloroplastic 2 105 - -
Cam10g2034 233 SFLD Glutathione Transferase (cytosolic) 30 204 IPR040079 -
Cam10g2034 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Cam10g2034 233 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
Cam10g2034 233 CDD GST_C_Lambda 113 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2034 K00799 - - csv:101210004 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1428 Cam-Chr2:27045186 Cam10g2034 Cam-Chr10:34191771 1.60E-82 dispersed
Cam10g2033 Cam-Chr10:34166678 Cam10g2034 Cam-Chr10:34191771 4.90E-97 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g0600 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.7e-65 244.6
Cam09g0602 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 4.0e-64 241.5
Cam09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.7e-59 223.8
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 1.2e-63 240.0
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.8e-60 227.3
Cam09g0602 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.9e-60 229.6
Cam09g0600 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cam09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.1e-64 241.1
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.1e-61 233.4
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 9.8e-63 236.9
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.5e-59 223.8
Cam09g0602 . 1 215 Glutathione S-transferase Gene Family AT2G47730 59.3 3.0e-69 258.8
Cam09g0600 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 6.9e-66 247.7
Cam09g0601 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Cam09g0603 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.9 5.8e-74 274.2
Cam09g0600 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cam04g0773 . 3 214 Glutathione S-transferase Gene Family AT3G09270 54.2 8.5e-65 243.8
Cam04g0776 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 4.7e-63 238.0
Cam04g0761 . 6 216 Glutathione S-transferase Gene Family AT3G09270 52.4 1.0e-62 236.9
Cam04g0777 . 3 212 Glutathione S-transferase Gene Family AT3G09270 54.2 1.0e-57 220.3
Cam05g0289 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.7e-57 219.5
Cam05g2631 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 2.0e-87 318.9
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 1.3e-81 299.7
Cam01g0865 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.1e-68 253.8
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G78380 52.2 2.1e-55 212.6
Cam07g1082 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 2.0e-79 292.4
Cam07g1084 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cam07g1083 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.7 6.5e-70 260.8
Cam01g0865 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.8e-80 295.8
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 1.5e-74 276.2
Cam01g0865 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cam07g1085 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.1e-53 206.8
Cam07g1082 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 1.9e-60 229.2
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 2.6e-90 328.6
Cam07g1084 . 1 218 Glutathione S-transferase Gene Family AT1G17180 64.2 4.0e-83 304.7
Cam07g1083 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 2.4e-80 295.4
Cam01g0865 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.6e-68 256.1
Cam07g1085 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 8.5e-57 217.2
Cam07g1082 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.3 6.9e-75 277.3
Cam07g1084 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cam07g1083 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 9.6e-69 256.9
Cam07g1085 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 6.9e-51 197.6
Cam07g1082 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 1.9e-72 269.2
Cam07g1084 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.8e-70 260.8
Cam07g1083 . 3 212 Glutathione S-transferase Gene Family AT3G43800 52.1 1.9e-64 242.7
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G53680 57.8 1.8e-70 262.7
Cam07g1084 . 2 218 Glutathione S-transferase Gene Family AT1G53680 56.6 1.1e-67 253.4
Cam01g0865 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.5e-64 240.4
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 7.5e-53 204.1
Cam02g0038 . 77 243 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Cam05g0259 . 61 217 Glutathione S-transferase Gene Family AT2G02390 51.0 9.3e-44 173.7
Cam02g0038 . 36 246 Glutathione S-transferase Gene Family AT2G02380 64.9 6.3e-76 280.8
Cam05g0259 . 18 217 Glutathione S-transferase Gene Family AT2G02380 53.5 5.0e-57 218.0
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41210 68.4 1.4e-92 336.3
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41240 66.7 1.5e-89 327.4
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02780 65.7 1.3e-84 309.7
Cam10g2033 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Cam02g1428 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 8.4e-79 290.4
Cam02g1428 . 29 292 Glutathione S-transferase Gene Family AT3G55040 60.4 1.3e-84 310.1
Cam10g2033 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.8e-78 287.3
Cam10g2034 . 6 226 Glutathione S-transferase Gene Family AT3G55040 60.1 1.3e-76 283.5
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02790 67.7 1.1e-89 326.6
Cam10g2033 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cam02g1428 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 8.9e-81 297.0
Cam02g1404 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cam05g1306 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.0e-72 266.9
Cam02g1404 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 4.9e-86 314.3
Cam05g1306 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 3.9e-75 278.1
Cam05g1306 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.7e-101 365.9
Cam02g1404 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cam11g1625 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000664 2 7 0 1 1 2 3 2 3 3 1 3 2 4 4 3 3 4 2 2 4 3 3 4 5 3 2 8 6 4 94