Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2038 ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACCGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGATGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCGTGGCTGAGGAAAAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTGCACGATGTGTCCATCTGATGGAGATTAA 855 58.83 MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGCTMCPSDGD 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34212714 34213568 - CaPI482276_10g020380.1 Cam10g2038 138701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2038 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
Cam10g2038 284 Pfam Ring finger domain 210 252 IPR001841 -
Cam10g2038 284 SUPERFAMILY RING/U-box 204 258 - -
Cam10g2038 284 SMART ring_2 211 251 IPR001841 -
Cam10g2038 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 183 257 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cam10g2038 284 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Cam10g2038 284 CDD RING-H2_PA-TM-RING 210 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2038 Cam-Chr10:34212714 Cam10g2090 Cam-Chr10:34609113 2.80E-12 dispersed
Cam10g2038 Cam-Chr10:34212714 Cam04g0615 Cam-Chr4:20130420 3.90E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2038 - - - 0.0