Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2045 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCCAGAACTCCGGCATCGACTCCACGCCGGAGCTTCAACGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACGTACGCCAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATTGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAACTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTAGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGACGATGAAATCCAAGCCATAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCATTGTAATGGAGGATTTACGAGCCATAGCCGAGTGTATGATCTCCTCTGGCTACGCTAAAGAATGCGTTAATATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTCGCAATTAGAACGTTGTTCGTTGGCGAACGAATTCTCTGTGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCATGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAGTCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCTCCGAAAATTGGCCGGACATCGAATCGATTTTCTCGTCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTCGCGAAACTCGGCGAGTTAGTCCGGGCCATAGTTATGGATCTCGAAGTCTCGATTCAGAAAAACTCATCCAAATCGCCGGTTGCTGGGGGTGGCGTTCATTCCTTAACGCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCTGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCAAAGCGCTACAAAGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGTGACGAGTGGATCACGAAGCAGGAGGCGAAAGTAAGGCAATTCGCGGCGAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAGATTCTCACAGGAAGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCGTTAA 1920 45.47 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPASTPRRSFNDAMIEQSIESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQTLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLDDEIQAIDDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSISENWPDIESIFSSESSSVVRSQALTSLAKLGELVRAIVMDLEVSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34275454 34277373 - CaPI482276_10g020450.1 Cam10g2045 138708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2045 639 FunFam Exocyst subunit Exo70 family protein 66 618 - -
Cam10g2045 639 Gene3D Exocyst complex component Exo70 56 617 - -
Cam10g2045 639 Pfam Exocyst complex component Exo70 N-terminal 49 132 - -
Cam10g2045 639 Pfam Exo70 exocyst complex subunit C-terminal 249 609 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cam10g2045 639 MobiDBLite consensus disorder prediction 617 639 - -
Cam10g2045 639 SUPERFAMILY Cullin repeat-like 75 611 IPR016159 -
Cam10g2045 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 612 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cam10g2045 639 MobiDBLite consensus disorder prediction 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2045 K07195 - - csv:101208543 1100.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2134 Cam-Chr2:34116291 Cam10g2045 Cam-Chr10:34275454 5.50E-178 dispersed
Cam03g0199 Cam-Chr3:2957541 Cam10g2045 Cam-Chr10:34275454 1.60E-164 dispersed
Cam10g2045 Cam-Chr10:34275454 Cam11g0630 Cam-Chr11:7839865 5.70E-13 dispersed
Cam01g0878 Cam-Chr1:10264630 Cam10g2045 Cam-Chr10:34275454 1.00E-71 transposed
Cam10g2045 Cam-Chr10:34275454 Cam02g1412 Cam-Chr2:26826600 1.70E-142 wgd
Cam10g2045 Cam-Chr10:34275454 Cam04g0872 Cam-Chr4:22871921 3.80E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g639 . . . . Bpe04g01604 . . . . . . . . . . . . Bhi03g01622 . . . Hepe04g0889 . . . . . . . . . . . . . . Csa04g01453 . . . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01975 Cam10g2045 Cec10g2088 Cco10g2071 Clacu10g2053 Cmu10g2801 Cre10g2192 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2389 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.0e-283 972.6
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G03540 71.3 2.0e-266 915.2
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 3.7e-299 1023.8
Cam05g2389 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.5e-271 932.2
Cam01g1543 . 145 631 EXO70 exocyst subunit family AT5G52350 63.7 2.8e-176 615.5
Cam05g2389 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 2.9e-165 578.9
Cam03g0045 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cam03g0045 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cam07g1557 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.5e-175 611.7
Cam01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.7 2.6e-189 659.1
Cam07g1113 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.6e-217 751.1
Cam07g1113 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cam07g1113 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.3e-219 756.9
Cam03g1366 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 3.5e-226 781.6
Cam03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 6.3e-212 734.2
Cam08g1718 . 11 682 EXO70 exocyst subunit family AT4G31540 73.7 2.1e-295 1011.5
Cam10g2045 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36