Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2058 ATGGTCGACGATGCCGACACTAGTGAGTGTTGCAAGGCAATGCTTGATGAAGGAGGCACCAAAAGGGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCTCTTCGTCGTATTCCGATCTGATTCTACTCTGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGGCTATACCGGATTTTTGTCACGACTGGCTCTGCAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAACGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCGGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGCCGATGTTATAA 2751 43.55 MVDDADTSECCKAMLDEGGTKRVFPDKTLALTNPLFVVFRSDSTLFSRSLAFEFSGYTGFLSRLALQIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQPML 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34364358 34374222 - CaPI482276_10g020580.1 Cam10g2058 138721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2058 916 Pfam Tify domain binding domain 499 548 IPR032308 -
Cam10g2058 916 Pfam Tify domain binding domain 332 386 IPR032308 -
Cam10g2058 916 ProSiteProfiles Zinc finger PHD-type profile. 642 703 IPR019787 -
Cam10g2058 916 ProSitePatterns Zinc finger PHD-type signature. 566 605 IPR019786 -
Cam10g2058 916 MobiDBLite consensus disorder prediction 168 189 - -
Cam10g2058 916 MobiDBLite consensus disorder prediction 128 154 - -
Cam10g2058 916 SUPERFAMILY FYVE/PHD zinc finger 561 608 IPR011011 -
Cam10g2058 916 Pfam PHD-finger 566 605 IPR019787 -
Cam10g2058 916 ProSitePatterns Zinc finger PHD-type signature. 645 700 IPR019786 -
Cam10g2058 916 SMART PHD_3 565 606 IPR001965 -
Cam10g2058 916 SMART PHD_3 644 701 IPR001965 -
Cam10g2058 916 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 703 IPR013083 -
Cam10g2058 916 PANTHER AUTOIMMUNE REGULATOR 101 913 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cam10g2058 916 FunFam PHD zinc finger protein 643 703 - -
Cam10g2058 916 MobiDBLite consensus disorder prediction 245 259 - -
Cam10g2058 916 MobiDBLite consensus disorder prediction 168 193 - -
Cam10g2058 916 MobiDBLite consensus disorder prediction 95 127 - -
Cam10g2058 916 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 625 IPR013083 -
Cam10g2058 916 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 800 888 IPR016181 -
Cam10g2058 916 FunFam PHD finger family protein 743 910 - -
Cam10g2058 916 MobiDBLite consensus disorder prediction 231 260 - -
Cam10g2058 916 Gene3D - 747 911 - -
Cam10g2058 916 ProSiteProfiles Zinc finger PHD-type profile. 563 608 IPR019787 -
Cam10g2058 916 SUPERFAMILY FYVE/PHD zinc finger 643 698 IPR011011 -
Cam10g2058 916 MobiDBLite consensus disorder prediction 93 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2110 Cam-Chr2:33896308 Cam10g2058 Cam-Chr10:34364358 5.40E-40 dispersed
Cam02g2242 Cam-Chr2:35040832 Cam10g2058 Cam-Chr10:34364358 1.40E-156 dispersed
Cam10g1933 Cam-Chr10:33360634 Cam10g2058 Cam-Chr10:34364358 8.30E-144 dispersed
Cam10g2058 Cam-Chr10:34364358 Cam07g0311 Cam-Chr7:4163707 2.90E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52824 PF16135 TDBD 5.60E-12 No_clan Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2058 - - - 0.0