Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2058 | ATGGTCGACGATGCCGACACTAGTGAGTGTTGCAAGGCAATGCTTGATGAAGGAGGCACCAAAAGGGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCTCTTCGTCGTATTCCGATCTGATTCTACTCTGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGGCTATACCGGATTTTTGTCACGACTGGCTCTGCAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAACGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCGGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGCCGATGTTATAA | 2751 | 43.55 | MVDDADTSECCKAMLDEGGTKRVFPDKTLALTNPLFVVFRSDSTLFSRSLAFEFSGYTGFLSRLALQIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQPML | 916 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34364358 | 34374222 | - | CaPI482276_10g020580.1 | Cam10g2058 | 138721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2058 | 916 | Pfam | Tify domain binding domain | 499 | 548 | IPR032308 | - | |
Cam10g2058 | 916 | Pfam | Tify domain binding domain | 332 | 386 | IPR032308 | - | |
Cam10g2058 | 916 | ProSiteProfiles | Zinc finger PHD-type profile. | 642 | 703 | IPR019787 | - | |
Cam10g2058 | 916 | ProSitePatterns | Zinc finger PHD-type signature. | 566 | 605 | IPR019786 | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 168 | 189 | - | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 128 | 154 | - | - | |
Cam10g2058 | 916 | SUPERFAMILY | FYVE/PHD zinc finger | 561 | 608 | IPR011011 | - | |
Cam10g2058 | 916 | Pfam | PHD-finger | 566 | 605 | IPR019787 | - | |
Cam10g2058 | 916 | ProSitePatterns | Zinc finger PHD-type signature. | 645 | 700 | IPR019786 | - | |
Cam10g2058 | 916 | SMART | PHD_3 | 565 | 606 | IPR001965 | - | |
Cam10g2058 | 916 | SMART | PHD_3 | 644 | 701 | IPR001965 | - | |
Cam10g2058 | 916 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 643 | 703 | IPR013083 | - | |
Cam10g2058 | 916 | PANTHER | AUTOIMMUNE REGULATOR | 101 | 913 | - | GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER) | |
Cam10g2058 | 916 | FunFam | PHD zinc finger protein | 643 | 703 | - | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 245 | 259 | - | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 168 | 193 | - | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 95 | 127 | - | - | |
Cam10g2058 | 916 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 554 | 625 | IPR013083 | - | |
Cam10g2058 | 916 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 800 | 888 | IPR016181 | - | |
Cam10g2058 | 916 | FunFam | PHD finger family protein | 743 | 910 | - | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 231 | 260 | - | - | |
Cam10g2058 | 916 | Gene3D | - | 747 | 911 | - | - | |
Cam10g2058 | 916 | ProSiteProfiles | Zinc finger PHD-type profile. | 563 | 608 | IPR019787 | - | |
Cam10g2058 | 916 | SUPERFAMILY | FYVE/PHD zinc finger | 643 | 698 | IPR011011 | - | |
Cam10g2058 | 916 | MobiDBLite | consensus disorder prediction | 93 | 154 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g2110 | Cam-Chr2:33896308 | Cam10g2058 | Cam-Chr10:34364358 | 5.40E-40 | dispersed | |
Cam02g2242 | Cam-Chr2:35040832 | Cam10g2058 | Cam-Chr10:34364358 | 1.40E-156 | dispersed | |
Cam10g1933 | Cam-Chr10:33360634 | Cam10g2058 | Cam-Chr10:34364358 | 8.30E-144 | dispersed | |
Cam10g2058 | Cam-Chr10:34364358 | Cam07g0311 | Cam-Chr7:4163707 | 2.90E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52824 | PF16135 | TDBD | 5.60E-12 | No_clan | Cam | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2058 | - | - | - | 0.0 |