Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2068 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTCCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGTACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1023 52.49 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAPATATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEVPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34456661 34458137 - CaPI482276_10g020680.1 Cam10g2068 138731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2068 340 MobiDBLite consensus disorder prediction 16 34 - -
Cam10g2068 340 MobiDBLite consensus disorder prediction 16 61 - -
Cam10g2068 340 MobiDBLite consensus disorder prediction 255 310 - -
Cam10g2068 340 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam10g2068 340 MobiDBLite consensus disorder prediction 122 180 - -
Cam10g2068 340 MobiDBLite consensus disorder prediction 35 55 - -
Cam10g2068 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 163 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g2068 340 MobiDBLite consensus disorder prediction 139 174 - -
Cam10g2068 340 MobiDBLite consensus disorder prediction 279 310 - -
Cam10g2068 340 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam10g2068 340 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam10g2068 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2023 Cam-Chr8:25916592 Cam10g2068 Cam-Chr10:34456661 5.60E-25 dispersed
Cam10g0808 Cam-Chr10:16342245 Cam10g2068 Cam-Chr10:34456661 5.70E-28 dispersed
Cam10g1567 Cam-Chr10:29386794 Cam10g2068 Cam-Chr10:34456661 2.40E-22 dispersed
Cam10g1791 Cam-Chr10:32033871 Cam10g2068 Cam-Chr10:34456661 3.10E-26 dispersed
Cam10g2068 Cam-Chr10:34456661 Cam02g2096 Cam-Chr2:33819555 7.90E-38 wgd
Cam10g2068 Cam-Chr10:34456661 Cam03g0159 Cam-Chr3:2481706 3.40E-41 wgd
Cam10g2068 Cam-Chr10:34456661 Cam04g0898 Cam-Chr4:23100913 3.50E-38 wgd
Cam10g2068 Cam-Chr10:34456661 Cam07g0322 Cam-Chr7:4321424 1.80E-45 wgd
Cam10g2068 Cam-Chr10:34456661 Cam09g2036 Cam-Chr9:34913714 1.50E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52825 PF02701 zf-Dof 3.40E-32 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2068 - - - 0.0