Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2068 | ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTCCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGTACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG | 1023 | 52.49 | MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAPATATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEVPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34456661 | 34458137 | - | CaPI482276_10g020680.1 | Cam10g2068 | 138731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 16 | 34 | - | - | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 16 | 61 | - | - | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 255 | 310 | - | - | |
Cam10g2068 | 340 | ProSiteProfiles | Zinc finger Dof-type profile. | 81 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 122 | 180 | - | - | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Cam10g2068 | 340 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 68 | 163 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 139 | 174 | - | - | |
Cam10g2068 | 340 | MobiDBLite | consensus disorder prediction | 279 | 310 | - | - | |
Cam10g2068 | 340 | Pfam | Dof domain, zinc finger | 80 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam10g2068 | 340 | ProSitePatterns | Zinc finger Dof-type signature. | 83 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam10g2068 | 340 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 41 | 51 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g2023 | Cam-Chr8:25916592 | Cam10g2068 | Cam-Chr10:34456661 | 5.60E-25 | dispersed | |
Cam10g0808 | Cam-Chr10:16342245 | Cam10g2068 | Cam-Chr10:34456661 | 5.70E-28 | dispersed | |
Cam10g1567 | Cam-Chr10:29386794 | Cam10g2068 | Cam-Chr10:34456661 | 2.40E-22 | dispersed | |
Cam10g1791 | Cam-Chr10:32033871 | Cam10g2068 | Cam-Chr10:34456661 | 3.10E-26 | dispersed | |
Cam10g2068 | Cam-Chr10:34456661 | Cam02g2096 | Cam-Chr2:33819555 | 7.90E-38 | wgd | |
Cam10g2068 | Cam-Chr10:34456661 | Cam03g0159 | Cam-Chr3:2481706 | 3.40E-41 | wgd | |
Cam10g2068 | Cam-Chr10:34456661 | Cam04g0898 | Cam-Chr4:23100913 | 3.50E-38 | wgd | |
Cam10g2068 | Cam-Chr10:34456661 | Cam07g0322 | Cam-Chr7:4321424 | 1.80E-45 | wgd | |
Cam10g2068 | Cam-Chr10:34456661 | Cam09g2036 | Cam-Chr9:34913714 | 1.50E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52825 | PF02701 | zf-Dof | 3.40E-32 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2068 | - | - | - | 0.0 |