Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2080 ATGTGTATGCCGTCACTTCCCGTCTCACGATCTCTATCTCCCTCATCACTCCCAGCATCTCTCTCTCTCTCTCGATCCCATCCCCCTTATCTCTCGCTCGACTCCCTCACTCCGGCTGCCGCTCGCCCTGCACCACCGCCGCTGCCGATATCACGAGAGAGCAGATCTCTCTCTCTCTTGAATCGTGTCTATAGCGCCGTCGTACCACAGGTCGCCGTCTCACCCCTCCGGTCGCCGCACACAGCATCATCCCTCCACGCTTTTATCCGCAGCGGTCCCATCCCGATCAGGCGATGGCAAGGCTTCTCTGACGCTCAAATACTCGCTCCGGCTAGGGAACCTCGAGTTTGGAACGGCGAAATCAAGTCGTTTCGTAGTCAATCCGGCAAGGATTCAGATCGCGCTGGGTCACCAATTTGCCTTCAGAATTGTTTTAGTTTGGGCCAAGATAATTGTTCTTTTGGGGTTCAAGCACAAGAGAGCGCTCATGGGAGGCCTAAATTCCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCAATCCATCACCAAGTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGATGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCGGAATGGTTACAGTAATACTTCTTATTGTGGTGATGATAACCCTTTTCAAACTGTGAGTGAAGATATACTTCAAATCAGAAGCACTTTAGGTGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCGAGTTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAAGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGCGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCTGAGAGTGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGATGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCAGCCTATGCGGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCGAGTTACCACAGAGATTTTTTGATTGATGAAGATAGCAGGTGGATACTGCAAGGATGGAAAGGTCGAATTATATATGCCATCTCTTCATGGAAACCTTCTATAGAGTAA 2673 43.96 MCMPSLPVSRSLSPSSLPASLSLSRSHPPYLSLDSLTPAAARPAPPPLPISRESRSLSLLNRVYSAVVPQVAVSPLRSPHTASSLHAFIRSGPIPIRRWQGFSDAQILAPAREPRVWNGEIKSFRSQSGKDSDRAGSPICLQNCFSLGQDNCSFGVQAQESAHGRPKFQNTIFSHNFQEFDCLLPNPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYRNGYSNTSYCGDDNPFQTVSEDILQIRSTLGDTISPSSNSSSNSIISGADGWVEFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAESATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISSWKPSIE 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34543467 34547125 + CaPI482276_10g020800.1 Cam10g2080 138743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2080 890 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 487 885 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam10g2080 890 ProSiteProfiles GRAS family profile. 506 886 IPR005202 -
Cam10g2080 890 MobiDBLite consensus disorder prediction 418 443 - -
Cam10g2080 890 Pfam GRAS domain family 515 886 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2080 K27753 - - csv:101205887 1348.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1600 Cam-Chr1:29541850 Cam10g2080 Cam-Chr10:34543467 2.60E-16 transposed
Cam01g2193 Cam-Chr1:34530644 Cam10g2080 Cam-Chr10:34543467 1.40E-52 transposed
Cam06g1173 Cam-Chr6:22525962 Cam10g2080 Cam-Chr10:34543467 2.10E-45 transposed
Cam07g1470 Cam-Chr7:29348653 Cam10g2080 Cam-Chr10:34543467 2.90E-40 transposed
Cam10g0352 Cam-Chr10:5701014 Cam10g2080 Cam-Chr10:34543467 1.30E-39 transposed
Cam10g0430 Cam-Chr10:6656386 Cam10g2080 Cam-Chr10:34543467 2.00E-59 transposed
Cam10g2080 Cam-Chr10:34543467 Cam02g2074 Cam-Chr2:33644658 3.30E-160 wgd
Cam10g2080 Cam-Chr10:34543467 Cam03g0134 Cam-Chr3:2246993 4.20E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g2080 . 209 888 GRAS Transcription Factor Family AT2G37650 54.4 2.9e-199 692.2
Cam03g0134 . 382 764 GRAS Transcription Factor Family AT3G46600 56.9 3.9e-127 452.2
Cam01g1789 . 50 468 GRAS Transcription Factor Family AT3G49950 60.4 3.4e-136 481.9
Cam10g0267 . 410 779 GRAS Transcription Factor Family AT3G60630 51.0 2.1e-92 337.0
Cam07g1470 . 36 443 GRAS Transcription Factor Family AT5G41920 65.6 3.2e-147 518.5
Cam04g0509 . 516 908 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Cam07g0944 . 1 608 GRAS Transcription Factor Family AT5G66770 57.1 3.2e-172 602.1
Cam01g1990 . 1 569 GRAS Transcription Factor Family AT5G66770 54.8 1.6e-150 530.0
Cam10g0430 . 45 544 GRAS Transcription Factor Family AT1G50600 58.5 1.0e-161 567.0
Cam02g0884 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 1.2e-149 526.9
Cam01g2193 . 111 548 GRAS Transcription Factor Family AT1G50600 57.2 1.3e-143 506.9
Cam09g0961 . 190 570 GRAS Transcription Factor Family AT1G50600 50.4 3.0e-108 389.4
Cam10g0365 . 1 634 GRAS Transcription Factor Family AT1G63100 50.4 6.8e-163 571.2
Cam01g0644 . 44 581 GRAS Transcription Factor Family AT1G14920 67.5 1.5e-205 712.6
Cam03g0875 . 48 599 GRAS Transcription Factor Family AT1G14920 61.1 2.0e-184 642.5
Cam05g1310 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 4.5e-157 551.6
Cam10g0352 . 34 400 GRAS Transcription Factor Family AT1G55580 51.9 2.2e-104 376.3
Cam03g0875 . 48 596 GRAS Transcription Factor Family AT1G66350 60.5 2.9e-177 618.6
Cam01g0644 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.7e-173 603.6
Cam05g1310 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 2.9e-161 565.5
Cam02g2074 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 1.6e-141 500.0
Cam02g0884 . 19 518 GRAS Transcription Factor Family AT5G48150 64.2 2.8e-177 618.6
Cam10g0430 . 17 544 GRAS Transcription Factor Family AT5G48150 59.1 3.8e-174 608.2
Cam01g2193 . 16 548 GRAS Transcription Factor Family AT5G48150 52.1 1.4e-152 536.6
Cam01g0644 . 46 578 GRAS Transcription Factor Family AT2G01570 68.4 2.1e-211 732.3
Cam03g0875 . 49 597 GRAS Transcription Factor Family AT2G01570 62.1 9.4e-188 653.7
Cam05g1310 . 31 555 GRAS Transcription Factor Family AT2G01570 58.2 3.0e-162 568.9
Cam03g0875 . 48 596 GRAS Transcription Factor Family AT1G66350 60.5 2.9e-177 618.6
Cam01g0644 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.7e-173 603.6
Cam05g1310 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 2.9e-161 565.5
Cam03g0875 . 49 597 GRAS Transcription Factor Family AT3G03450 62.6 1.3e-178 623.2
Cam01g0644 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 3.3e-171 598.6
Cam05g1310 . 31 555 GRAS Transcription Factor Family AT3G03450 58.3 7.7e-160 560.8
Cam03g0875 . 48 599 GRAS Transcription Factor Family AT5G17490 56.3 8.1e-159 557.4
Cam01g0644 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 3.2e-155 545.4
Cam05g1310 . 28 555 GRAS Transcription Factor Family AT5G17490 52.9 1.6e-138 490.0
Cam09g0961 . 1 570 GRAS Transcription Factor Family AT1G21450 57.6 9.2e-175 610.5
Cam10g0430 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 2.8e-115 412.9
Cam03g0134 . 390 764 GRAS Transcription Factor Family AT5G59450 57.0 6.0e-129 458.4
Cam10g2080 . 504 888 GRAS Transcription Factor Family AT5G59450 54.6 2.7e-121 433.0
Cam01g2193 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 1.1e-176 616.7
Cam02g0884 . 1 519 GRAS Transcription Factor Family AT4G17230 50.4 7.5e-136 481.1
Cam10g0430 . 60 544 GRAS Transcription Factor Family AT4G17230 52.2 3.7e-135 478.8
Cam02g0884 . 134 518 GRAS Transcription Factor Family AT2G04890 65.8 4.8e-146 514.6
Cam10g0430 . 166 544 GRAS Transcription Factor Family AT2G04890 62.5 1.9e-142 502.7
Cam01g2193 . 169 548 GRAS Transcription Factor Family AT2G04890 58.4 2.5e-126 449.1
Cam03g1312 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 9.4e-178 620.2
Cam05g2278 . 49 485 GRAS Transcription Factor Family AT1G50420 60.1 2.0e-143 506.1
Cam06g0310 . 379 744 GRAS Transcription Factor Family AT4G00150 60.2 5.0e-122 435.3
Cam10g0267 . 416 779 GRAS Transcription Factor Family AT4G00150 55.7 2.1e-104 376.7
Cam07g0944 . 1 608 GRAS Transcription Factor Family AT3G50650 51.6 6.7e-148 521.2
Cam04g0509 . 306 906 GRAS Transcription Factor Family AT3G54220 64.1 4.7e-204 708.0
Cam07g1470 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 6.0e-135 478.4
Cam01g1800 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 9.1e-158 553.9
Cam02g1314 . 106 496 GRAS Transcription Factor Family AT4G37650 56.6 5.1e-124 441.8
Cam06g0126 . 64 456 GRAS Transcription Factor Family AT4G37650 50.6 8.4e-111 397.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52827 PF03514 GRAS 1.40E-115 CL0063 Cam TF