Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2080 ATGTGTATGCCGTCACTTCCCGTCTCACGATCTCTATCTCCCTCATCACTCCCAGCATCTCTCTCTCTCTCTCGATCCCATCCCCCTTATCTCTCGCTCGACTCCCTCACTCCGGCTGCCGCTCGCCCTGCACCACCGCCGCTGCCGATATCACGAGAGAGCAGATCTCTCTCTCTCTTGAATCGTGTCTATAGCGCCGTCGTACCACAGGTCGCCGTCTCACCCCTCCGGTCGCCGCACACAGCATCATCCCTCCACGCTTTTATCCGCAGCGGTCCCATCCCGATCAGGCGATGGCAAGGCTTCTCTGACGCTCAAATACTCGCTCCGGCTAGGGAACCTCGAGTTTGGAACGGCGAAATCAAGTCGTTTCGTAGTCAATCCGGCAAGGATTCAGATCGCGCTGGGTCACCAATTTGCCTTCAGAATTGTTTTAGTTTGGGCCAAGATAATTGTTCTTTTGGGGTTCAAGCACAAGAGAGCGCTCATGGGAGGCCTAAATTCCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCAATCCATCACCAAGTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGATGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCGGAATGGTTACAGTAATACTTCTTATTGTGGTGATGATAACCCTTTTCAAACTGTGAGTGAAGATATACTTCAAATCAGAAGCACTTTAGGTGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCGAGTTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAAGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGCGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCTGAGAGTGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGATGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCAGCCTATGCGGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCGAGTTACCACAGAGATTTTTTGATTGATGAAGATAGCAGGTGGATACTGCAAGGATGGAAAGGTCGAATTATATATGCCATCTCTTCATGGAAACCTTCTATAGAGTAA 2673 43.96 MCMPSLPVSRSLSPSSLPASLSLSRSHPPYLSLDSLTPAAARPAPPPLPISRESRSLSLLNRVYSAVVPQVAVSPLRSPHTASSLHAFIRSGPIPIRRWQGFSDAQILAPAREPRVWNGEIKSFRSQSGKDSDRAGSPICLQNCFSLGQDNCSFGVQAQESAHGRPKFQNTIFSHNFQEFDCLLPNPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYRNGYSNTSYCGDDNPFQTVSEDILQIRSTLGDTISPSSNSSSNSIISGADGWVEFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAESATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISSWKPSIE 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34543467 34547125 + CaPI482276_10g020800.1 Cam10g2080 138743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2080 890 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 487 885 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam10g2080 890 ProSiteProfiles GRAS family profile. 506 886 IPR005202 -
Cam10g2080 890 MobiDBLite consensus disorder prediction 418 443 - -
Cam10g2080 890 Pfam GRAS domain family 515 886 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1600 Cam-Chr1:29541850 Cam10g2080 Cam-Chr10:34543467 2.60E-16 transposed
Cam01g2193 Cam-Chr1:34530644 Cam10g2080 Cam-Chr10:34543467 1.40E-52 transposed
Cam06g1173 Cam-Chr6:22525962 Cam10g2080 Cam-Chr10:34543467 2.10E-45 transposed
Cam07g1470 Cam-Chr7:29348653 Cam10g2080 Cam-Chr10:34543467 2.90E-40 transposed
Cam10g0352 Cam-Chr10:5701014 Cam10g2080 Cam-Chr10:34543467 1.30E-39 transposed
Cam10g0430 Cam-Chr10:6656386 Cam10g2080 Cam-Chr10:34543467 2.00E-59 transposed
Cam10g2080 Cam-Chr10:34543467 Cam02g2074 Cam-Chr2:33644658 3.30E-160 wgd
Cam10g2080 Cam-Chr10:34543467 Cam03g0134 Cam-Chr3:2246993 4.20E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52827 PF03514 GRAS 1.40E-115 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2080 K27753 - csv:101205887 1348.18