Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2096 ATGGCCCAACTCTGTTTTCTCTGTTTCTTCTTCTTCCTCTGCGTCGCCGGCCCCGCCGCATCCCAGCAGCTCTACTTCGCTGGATTTCATGACGCCGCCGCCGCCGCCGCCAACTTAACCCTCACTGACATCGCCAAGATCGAGCAGAACGGAATCTTAAAGCTCACAAATGACACCAGTCGATTACAGGGTCATGCCTTTTACAGTTCCCCTGTTCGCTTCAAAAACTCTTCCGACGGCAAAGCTTTTTCCTTCTCCACCGCTTTTGTCATCGCCGTCGTCCCCGAATACCCGACTCTAGGCGGCCATGGACTCGCCTTCACCATTGCCCATTCGAAGAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCGACCGACGTCGGAAACTTCACGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTTGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTTTCTAATGCCTCCACCACCGCTTCCTATTTCGTCGACGATGGACCCAACAAGCAGAATCTAACCCTAAAAAGTGGGAGGCCGATTCAAGCTTGGATCGATTACGATTCCTCTGTAAATTCACTCACGGTTGCGCTTTCTCCGTTTTCAACCAAACCCAAGAAGCCGATTCTGTCGTTTAATGTAGATCTCTCTCCGATTCTTCAGGAGTCTATGTACGTTGGGTTCTCGGCCTCAACTGGGCTTCTTGCAAGTTCACACTATGTGTTGGGATGGAGTTTCAGTATGAATGGACCAGCTGAGTCTCTGGATCTGTCTTCTTTGCCTTCTGTTCCAGGTCCGAAGAAGAAGCACACTGGTTTTACAATTGGGGTTTCTGTTGCGGCCGTTTTGATTGTGGTAATCGCGATTTGTGTTGCTGTTTTAATCATTTGGAAGATAAAAAACGCTGATATAATCGAGGCCTGGGAGCACGAAATCGGCCCTCATCGGTACTCTTACAAGGAGCTTAAGCAAGCGACTAAGCGATTTAGGGATAAAGAGCTCTTAGGGCGCGGTGGGTTTGGGAAAGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCAAGTGGCTGTGAAGCGGATTTCTCACGAATCGAAACAGGGCCTAAGGGAATTTGTGTCGGAAATCGCTAGCATTGGCCGGCTTCGTCACCGGAACTTGGTTCAGTTGCTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTGGTTTATGATTTCATGGCTAATGGGAGCTTGGATAACTACATTTTCGACGACCCGGATGTGAATCTGAGTTGGGAACAAAGGTTCAGAATCATTAAGGGCGTCGCCTCCGGTTTGCTCTACTTGCACGAAGGCTACGAGCAGGTGGTGATTCATAGAGATGTGAAAGCCAGTAATGTCCTGCTCGACGGCGAGATGAATGGGAAGCTCGGCGATTTCGGCCTGGCTCGACTATACGAACACGGGGCAAACCCGAGCACGACTCGGGTCGTCGGCACTCTGGGATATCTGGCGCCGGAGTTACCCAGAACAGGGAAGGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTTCTGCTAGAAGTGGCTTGCGGACGGCGGCCGATCGACCCGAAATCGTCGTCGGAAGAGCTAGTTCTGGTGGATTGGGTGTGGGAGAATTACAGGGAAGGGAAATTGCTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTAGCTGAGGCAGTGATGATTTTGAAGCTGGGGTTGTTCTGTTCGAACGATTCGGCGGCGGCGCGGCCTACTATGAGGCAGGTGGTGAGGTTTCTGGAGGGGGAGATTGGAGTTCCTGAGGAGATATCAGCGCCGAAAGTGGTGGAAGGAGGGAGGAATGGTGAAGGGTTCGATGATTTTGTGAATTCATTTGCATCTTCTTCCTTTAACAAGTTTAGTTCTTATTCATCGACTGGAAATAGGGACATGGATATGAGTTTTGCTTCATTTTCAACTTCTCCTCTTTCACTTCTCAACGGCAGAGACTAA 2052 50.34 MAQLCFLCFFFFLCVAGPAASQQLYFAGFHDAAAAAANLTLTDIAKIEQNGILKLTNDTSRLQGHAFYSSPVRFKNSSDGKAFSFSTAFVIAVVPEYPTLGGHGLAFTIAHSKNLRGLPSQYLGLLNATDVGNFTNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNASTTASYFVDDGPNKQNLTLKSGRPIQAWIDYDSSVNSLTVALSPFSTKPKKPILSFNVDLSPILQESMYVGFSASTGLLASSHYVLGWSFSMNGPAESLDLSSLPSVPGPKKKHTGFTIGVSVAAVLIVVIAICVAVLIIWKIKNADIIEAWEHEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDDPDVNLSWEQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREGKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPTMRQVVRFLEGEIGVPEEISAPKVVEGGRNGEGFDDFVNSFASSSFNKFSSYSSTGNRDMDMSFASFSTSPLSLLNGRD 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34632247 34634394 - CaPI482276_10g020960.1 Cam10g2096 138759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2096 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
Cam10g2096 683 SUPERFAMILY Protein kinase-like (PK-like) 324 626 IPR011009 -
Cam10g2096 683 CDD lectin_legume_LecRK_Arcelin_ConA 26 264 IPR001220 GO:0030246(InterPro)
Cam10g2096 683 Gene3D - 22 263 - -
Cam10g2096 683 Pfam Legume lectin domain 23 274 IPR001220 GO:0030246(InterPro)
Cam10g2096 683 CDD STKc_IRAK 349 615 - -
Cam10g2096 683 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2096 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Cam10g2096 683 PANTHER - 40 633 IPR050528 GO:0005886(PANTHER)
Cam10g2096 683 Gene3D Transferase(Phosphotransferase) domain 1 420 628 - -
Cam10g2096 683 ProSiteProfiles Protein kinase domain profile. 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2096 683 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Cam10g2096 683 Pfam Protein kinase domain 344 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2096 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2096 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 282 IPR013320 -
Cam10g2096 683 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Cam10g2096 683 FunFam L-type lectin-domain containing receptor kinase S.4 20 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0926 Cam-Chr4:23374184 Cam10g2096 Cam-Chr10:34632247 1.30E-214 dispersed
Cam07g0282 Cam-Chr7:3905758 Cam10g2096 Cam-Chr10:34632247 5.90E-125 dispersed
Cam10g1722 Cam-Chr10:31247018 Cam10g2096 Cam-Chr10:34632247 3.40E-101 dispersed
Cam10g2007 Cam-Chr10:33952059 Cam10g2096 Cam-Chr10:34632247 5.10E-111 dispersed
Cam10g2096 Cam-Chr10:34632247 Cam10g2197 Cam-Chr10:35392340 2.50E-152 dispersed
Cam06g1883 Cam-Chr6:29875648 Cam10g2096 Cam-Chr10:34632247 4.00E-139 transposed
Cam09g1552 Cam-Chr9:26078624 Cam10g2096 Cam-Chr10:34632247 8.70E-97 transposed
Cam10g2096 Cam-Chr10:34632247 Cam04g0924 Cam-Chr4:23350593 4.10E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85525 PF00069 Pkinase 6.00E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2096 - - - 0.0