Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2115 ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCTGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTTGATGAGGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCGAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCTTGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAATAGCGGTGGAGTTTCCTTAACTCTTGGTCTCCACCAAAACAATGTCATAGGTGGCTTTTCCGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCGAAGGTAACAATGACGGGTATGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1428 47.06 MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESLNVSYNLSSHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIEGNNDGYVMGGHFSRDVLGGQLLHDFVG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34766345 34769544 - CaPI482276_10g021150.1 Cam10g2115 138778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2115 475 MobiDBLite consensus disorder prediction 341 382 - -
Cam10g2115 475 FunFam BEL1-like homeodomain protein 9 258 320 - -
Cam10g2115 475 MobiDBLite consensus disorder prediction 1 38 - -
Cam10g2115 475 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Cam10g2115 475 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677(InterPro)
Cam10g2115 475 MobiDBLite consensus disorder prediction 145 164 - -
Cam10g2115 475 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam10g2115 475 MobiDBLite consensus disorder prediction 345 370 - -
Cam10g2115 475 CDD homeodomain 255 316 IPR001356 GO:0003677(InterPro)
Cam10g2115 475 Gene3D - 258 320 - -
Cam10g2115 475 SMART prehox3 98 226 IPR006563 -
Cam10g2115 475 Coils Coil 326 346 - -
Cam10g2115 475 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 358 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam10g2115 475 Pfam Associated with HOX 103 224 IPR006563 -
Cam10g2115 475 SMART HOX_1 255 319 IPR001356 GO:0003677(InterPro)
Cam10g2115 475 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1793 Cam-Chr10:32060581 Cam10g2115 Cam-Chr10:34766345 3.20E-49 dispersed
Cam10g2115 Cam-Chr10:34766345 Cam11g0432 Cam-Chr11:5734054 3.70E-49 dispersed
Cam03g0294 Cam-Chr3:4144824 Cam10g2115 Cam-Chr10:34766345 4.70E-63 transposed
Cam10g2115 Cam-Chr10:34766345 Cam04g0786 Cam-Chr4:22206324 4.00E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52828 PF07526 POX 5.80E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2115 - - - 0.0