Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2153 ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAAAGGCAGGCGATCGGGACGGCAGCTCGAAAGGACTACCGAGAGCCGCCCCCGGCGCCGCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTGTAATGGGCGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCTTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCTGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCGTCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTTCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACTGGAACCGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTCATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 858 52.68 MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTVMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAVVKAFEKGPFELLGGGANTVNEGYSNTAALGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPFIGAALAALYHQTVIRAIPFKSK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35051659 35054180 - CaPI482276_10g021530.1 Cam10g2153 138816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2153 285 FunFam Probable aquaporin PIP1-2 37 285 - -
Cam10g2153 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cam10g2153 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cam10g2153 285 NCBIfam MIP family channel protein 56 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 Pfam Major intrinsic protein 45 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2153 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 284 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cam10g2153 285 SUPERFAMILY Aquaporin-like 47 278 IPR023271 -
Cam10g2153 285 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0406 Cam-Chr7:5402798 Cam10g2153 Cam-Chr10:35051659 7.10E-128 dispersed
Cam07g0407 Cam-Chr7:5409974 Cam10g2153 Cam-Chr10:35051659 7.10E-128 dispersed
Cam08g1194 Cam-Chr8:18281454 Cam10g2153 Cam-Chr10:35051659 1.20E-100 dispersed
Cam10g1998 Cam-Chr10:33871730 Cam10g2153 Cam-Chr10:35051659 1.00E-94 dispersed
Cam01g2459 Cam-Chr1:36377652 Cam10g2153 Cam-Chr10:35051659 4.30E-18 transposed
Cam05g0630 Cam-Chr5:5475215 Cam10g2153 Cam-Chr10:35051659 1.40E-15 transposed
Cam05g1262 Cam-Chr5:12476705 Cam10g2153 Cam-Chr10:35051659 5.40E-18 transposed
Cam10g2153 Cam-Chr10:35051659 Cam07g0405 Cam-Chr7:5396100 2.90E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2153 K09872 - vvi:100233000 476.092