Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2160 GAATCAGATCGCTTTGCTCTACTTGATTTGAAAGGCAGAGTATTGAACGACCCATTCAAAATCACAAGTTCTTGGAACGATTCGACACACTTTTGTGATTGGATTGGTGTCACTTGCAATTCCACCATCGGAAGAGTAGTGACTTTGAACTTAGAAGGTCGAGATATAACTGGTTCCATACCTCCTTCTTTGGGAAACCTTTCATACCTAACTGAAATCAATTTGGGAGGCAACAAATTCCAAGGCTCAATTCCCCAAGAGTTTGGTCGGCTACTGCAATTGCGTCTTCTCAATTTATCCTCCAATAACTTTGGTGGTGAGATTCCAGAGAATATAAGTCATTGCACTGAGCTGCTTGTCTTGGACATTAATGACAATGGGCTTGTAGGCCAAATTCCAAACCAATTGTTCACATTGACCAAGTTGGAACGACTCAGGTTTGGCATTAACAATCTGACTGGAACCATCCCACCTTGGATAGGAAATTTTTCCTCGATATTGACTATGTCATTTGCGTGGAACCACTTTCACGGAAGCATTCCTAGTGAAATAGGGTACCTATCTAGATTGGAACAGTTCACAGTTCCTGTGAATAATTTGACAGGTACAATACCACATTCAATCTACAACATAACTTCTCTAATTCTCTTGTCTTTTTCTGAAAATCAATTGCAAGGAACTCTACCATCAAATATTGGATTTACTCTTCCCAATCTTCAGACCTTTGCCGGTGGTGTCAATAATTTCAGTGGGCTTATTCCAAAGTCCTTGGCTAATATCTCTGGCCTTCAAGTTTTAGATTTTCCTTTTAACAATCTCGTTGGAACGATATCTGATGAGATAGGGAGACTAAAACACTTGGAGCGTTTGAATTTTGGACAAAATAGTCTTGGATTTGGAAAAGTTGGTGACTTAAATTTCATTAGTTCCTTGGTTAATTGTACTAGTCTAAGAATTTTGGGTCTAGATAATAACCATTTTGGGGGAATACTACCTTCCTCCATTGCCAACCTTTCAAACCAGCTGACAGGGCTAACATTGGGTGGAAATAACTTAAGTGGAAACATTCCTCCATGGATTACAAACTTGATTAACTTGCAAGTTCTTGGACTGGAAGGCAACTTTATGAATGGTGATATCCCTCCCAATATAGGGAACCTTAAAAACTTGGTGCTTTTGTATTTGGTTGGAAATGAATTAACTGGGCCAATCCCTTCCTCCATTGGTAACTTATCTTCCCTCACCAAACTCTACTTGAGTAATAACAAACTCGATGGAAGTATACCAACAAGCTTAGGACAATGCAAAAGCCTCCTAAGTCTTCAGCTATCTAGTAACAACCTAAGCGGCACCATACCAAAGGAAATCCTTGGTCTCCCTTCCCTTTCCATCATTTTGGCCTTAGATCATAACTCGTTTACTGGTTTACTACCCGATGAAGTTGGTGGTTTACGCGGTCTAGTAGAACTAGATGCATCAGAGAACAAATTATCAGGTGATATTCCTAGCAACCTCGGTAAATGCATTAACATGGAACACTTGTATCTTGGGGGTAACCAGTTTCAGGGAACAATTCCTCAATCTTTGGAAGCTTTGAAAGGCCTTGTAAAACTAAATTTATCAAGCAACAACTTATCTGGGCCAATTCCCCAATTTCTTAGCAAACTTCTCTCGCTCACATATCTTGATCTATCTAACAATAACTTTGATGGAGAAGTGCCCAAAGAAGGAGTTTTTTCCAACTCAACCATGTTTTCTATCCTTGGGAACAGTAATCTATGCGGTGGTTTACAAGAATTATATTTACTTCCGTGCATGTCTAATCAAACATATTCGTCCAATAAGCAGTTTAAAGCATCAAAGGTGCTAATCCCTATAGCATCTGCGGTCGCTTTTACTGTTGTTTTGGTCAGCATCTTTTCTGTGTATTTTATGCTTAAGAAGTCAAGGAAGGATACTTCAACTTCATCTTCTAGAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTCAGTAAATCAACCGACGGATTCTCTACGGATAATTTGATTGGTTCTGGTAGTTTTGGCATAGTGTATAAAGGCATACTTTCAAATGGTGGATCTATTGTTGCCATTAAAGTTTTAAATCTCCAACAACAAGGTGCTTCCAAGAGTTTTGTTGATGAATGCAATGCCCTCTCAAACATACGACATCGAAATCTTCTCAAGGTCATAACTTCTTGCTCAAGTATTGATGTACACGGTAATGAATTTAAAGCTCTAGTCTTCAATTTCATGTCCAATGGGAATCTTGATTGTTGGCTTCATCCCAAAAAAGAAGGGAAGAATCAGAGAAGGTTAAGTCTCATCCAAAGATTGAACATTGCTATTGATATTGCATGTGGGTTAGACTATCTCCATAATCATTGTGAGCCTCCAATTGTTCATTGTGATCTAAAGCCTAGCAATATATTGCTCAACGAAGATCTGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATTCATGTTGGAAGGATCAAATGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATCGGATATATCCCTCCAGAGTACGGTACGGGTAGTAGAATTTCCATCGAAGGAGATATCTTCAGCTATGGGATACTGCTACTAGAGATGATCATCGGAAAAAGACCCACCGACAACACCTTTAGCAATGATGTAGATATTCATTTGTTCACTACAAGGGCACTGTCTCAGGATGCCTTGAGCATAATCGACTCTTCAATACTATTTGAAGAAACACGTCATGAAGAAGATGAGGAAGACATGGTAGAAGTAGTAGCGATGAAGAGCGAAGAAGATCAAAGAGAAATGGTACCAAGATGGATGGAAGAGTGTGTAATCTCGATAATGAGAATTGGCTTGACATGCTCTTTGAAAGCACCCAGTGAGAGAACGTCAATGAATATTGTCGTTAATAATTTGCAAGCAATTAAAAGCTCCTATCTCTAA 3000 39.07 ESDRFALLDLKGRVLNDPFKITSSWNDSTHFCDWIGVTCNSTIGRVVTLNLEGRDITGSIPPSLGNLSYLTEINLGGNKFQGSIPQEFGRLLQLRLLNLSSNNFGGEIPENISHCTELLVLDINDNGLVGQIPNQLFTLTKLERLRFGINNLTGTIPPWIGNFSSILTMSFAWNHFHGSIPSEIGYLSRLEQFTVPVNNLTGTIPHSIYNITSLILLSFSENQLQGTLPSNIGFTLPNLQTFAGGVNNFSGLIPKSLANISGLQVLDFPFNNLVGTISDEIGRLKHLERLNFGQNSLGFGKVGDLNFISSLVNCTSLRILGLDNNHFGGILPSSIANLSNQLTGLTLGGNNLSGNIPPWITNLINLQVLGLEGNFMNGDIPPNIGNLKNLVLLYLVGNELTGPIPSSIGNLSSLTKLYLSNNKLDGSIPTSLGQCKSLLSLQLSSNNLSGTIPKEILGLPSLSIILALDHNSFTGLLPDEVGGLRGLVELDASENKLSGDIPSNLGKCINMEHLYLGGNQFQGTIPQSLEALKGLVKLNLSSNNLSGPIPQFLSKLLSLTYLDLSNNNFDGEVPKEGVFSNSTMFSILGNSNLCGGLQELYLLPCMSNQTYSSNKQFKASKVLIPIASAVAFTVVLVSIFSVYFMLKKSRKDTSTSSSRKEFLPQISYLELSKSTDGFSTDNLIGSGSFGIVYKGILSNGGSIVAIKVLNLQQQGASKSFVDECNALSNIRHRNLLKVITSCSSIDVHGNEFKALVFNFMSNGNLDCWLHPKKEGKNQRRLSLIQRLNIAIDIACGLDYLHNHCEPPIVHCDLKPSNILLNEDLVAHVGDFGLARFMLEGSNDQISFSQTMSLALKGSIGYIPPEYGTGSRISIEGDIFSYGILLLEMIIGKRPTDNTFSNDVDIHLFTTRALSQDALSIIDSSILFEETRHEEDEEDMVEVVAMKSEEDQREMVPRWMEECVISIMRIGLTCSLKAPSERTSMNIVVNNLQAIKSSYL 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35101909 35111838 + CaPI482276_10g021600.1 Cam10g2160 138823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2160 999 SUPERFAMILY L domain-like 2 297 - -
Cam10g2160 999 ProSiteProfiles Protein kinase domain profile. 678 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2160 999 Pfam Leucine rich repeat N-terminal domain 2 40 IPR013210 -
Cam10g2160 999 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524(InterPro)
Cam10g2160 999 SMART serkin_6 678 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2160 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 308 611 - -
Cam10g2160 999 Gene3D Ribonuclease Inhibitor 2 120 IPR032675 -
Cam10g2160 999 SUPERFAMILY Protein kinase-like (PK-like) 650 991 IPR011009 -
Cam10g2160 999 Pfam Protein kinase domain 680 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2160 999 SMART LRR_typ_2 411 435 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 484 508 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 91 115 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 459 483 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 556 581 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 532 555 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 363 387 IPR003591 -
Cam10g2160 999 SMART LRR_typ_2 139 163 IPR003591 -
Cam10g2160 999 Gene3D Ribonuclease Inhibitor 122 233 IPR032675 -
Cam10g2160 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2160 999 PANTHER OS04G0122200 PROTEIN 22 994 IPR051809 -
Cam10g2160 999 Gene3D Ribonuclease Inhibitor 234 303 IPR032675 -
Cam10g2160 999 Gene3D Transferase(Phosphotransferase) domain 1 760 998 - -
Cam10g2160 999 Gene3D Phosphorylase Kinase; domain 1 640 759 - -
Cam10g2160 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 759 - -
Cam10g2160 999 SUPERFAMILY L domain-like 340 595 - -
Cam10g2160 999 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 40 307 - -
Cam10g2160 999 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 760 999 - -
Cam10g2160 999 Gene3D Ribonuclease Inhibitor 304 601 IPR032675 -
Cam10g2160 999 Pfam Leucine Rich Repeat 437 458 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 70 91 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 342 363 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 413 435 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 316 338 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 389 411 IPR001611 GO:0005515(InterPro)
Cam10g2160 999 Pfam Leucine Rich Repeat 487 508 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1232 Cam-Chr1:20653395 Cam10g2160 Cam-Chr10:35101909 5.10E-181 dispersed
Cam03g0681 Cam-Chr3:7742017 Cam10g2160 Cam-Chr10:35101909 1.70E-76 dispersed
Cam08g2105 Cam-Chr8:26511642 Cam10g2160 Cam-Chr10:35101909 2.50E-79 dispersed
Cam10g2160 Cam-Chr10:35101909 Cam11g0649 Cam-Chr11:8029619 4.60E-102 dispersed
Cam10g2158 Cam-Chr10:35095508 Cam10g2160 Cam-Chr10:35101909 1.80E-24 proximal
Cam10g2159 Cam-Chr10:35095953 Cam10g2160 Cam-Chr10:35101909 5.90E-108 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85529 PF00069 Pkinase 1.00E-39 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2160 - - - 0.0