Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2162 ATGGAAAATCTGCTGGATCAAAGTCTTCGATGCGGTCGCTCCTCATTTCCCGCTAGATTTTCATCTCGAAATCGCATCTCAAGCCTACGCTGGCTTCAACCACTAGTCGAGTTATCGAATTTTCGCGATAGTTATTTGAGAAGTCGCCGAAGACCGCCGCCACATTTGCAAAACAGCCTTTTATCTCATGGGACAGACTGCAGGTTTGCATTCGCAACTCTTGTCATTCGAATTTTGACGTCATGGCATGAGGGCACATTTGACCTTTATCATGAGGCACACCCACCACCTGAGGTCCTGAATTCTAGAAGTACAGTCGGCCTTAGAAATTACTTATCAATTTATTGCTCTGACCAAAGAAAAAGGGCCGTTAAAGGAAATAGCAGTCCCGAGGAACCCGCAGAAGGAATTGCTGTTACCAACAATGTACGCCTCTTTTCTTATAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCAACCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGCACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAACATCTCGTTGAACTGATTGGTTGTTGTGTAGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGTACAATGAGTAAGCATGTCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATACCTACATGAAGAAGCTGAATATTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGATAACGTTACTCATGTTAGCACTCGAGTGGCCGGAACTGTTGGATATTTGGCCCCCGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAATAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAACAGTTGTCAATGCTCGTGGAATGGACTTGGAAATTAAGACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTGGTCGATTATCCGAAGGCTGAGGTGATGCGTTTCATCACAGTTGCACTCTTCTGTACCCAAGCAGCTGCAAATCAAAGACCAACCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAATGAAAAACTATTGACAGAGCCAGGAGTATACAAAGGACACAAAACTAGGAAGTTAAATGGTGCTGGTACAAGTTCTGAGGGGACTTCATTCTCCCATGGAGACAGAGGAAATTTTCTCAAGTAG 1428 42.93 MENLLDQSLRCGRSSFPARFSSRNRISSLRWLQPLVELSNFRDSYLRSRRRPPPHLQNSLLSHGTDCRFAFATLVIRILTSWHEGTFDLYHEAHPPPEVLNSRSTVGLRNYLSIYCSDQRKRAVKGNSSPEEPAEGIAVTNNVRLFSYNSLRSATRNFHPSTRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQHLVELIGCCVEGTHRILVYEYLENNSLASTLLGTMSKHVILDWPKRAKICLGTALGLAYLHEEAEYSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIVSGSSSSKTAFGEQLSMLVEWTWKLRQEGRLVELIDPELVDYPKAEVMRFITVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTEPGVYKGHKTRKLNGAGTSSEGTSFSHGDRGNFLK 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35118581 35127537 - CaPI482276_10g021620.1 Cam10g2162 138825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2162 475 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 112 461 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cam10g2162 475 MobiDBLite consensus disorder prediction 449 475 - -
Cam10g2162 475 FunFam Putative LRR receptor-like serine/threonine-protein kinase 234 440 - -
Cam10g2162 475 SUPERFAMILY Protein kinase-like (PK-like) 138 428 IPR011009 -
Cam10g2162 475 Gene3D Transferase(Phosphotransferase) domain 1 234 441 - -
Cam10g2162 475 Pfam Protein tyrosine and serine/threonine kinase 162 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2162 475 SMART serkin_6 158 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2162 475 ProSiteProfiles Protein kinase domain profile. 158 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2162 475 MobiDBLite consensus disorder prediction 453 467 - -
Cam10g2162 475 CDD STKc_IRAK 164 430 - -
Cam10g2162 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2162 475 FunFam cold-responsive protein kinase 1 129 233 - -
Cam10g2162 475 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524(InterPro)
Cam10g2162 475 Gene3D Phosphorylase Kinase; domain 1 129 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0596 Cam-Chr3:6803201 Cam10g2162 Cam-Chr10:35118581 4.90E-114 dispersed
Cam07g1093 Cam-Chr7:25414110 Cam10g2162 Cam-Chr10:35118581 2.40E-92 dispersed
Cam09g0653 Cam-Chr9:6477755 Cam10g2162 Cam-Chr10:35118581 9.50E-74 dispersed
Cam10g1281 Cam-Chr10:26241173 Cam10g2162 Cam-Chr10:35118581 6.60E-73 dispersed
Cam10g2162 Cam-Chr10:35118581 Cam11g1759 Cam-Chr11:30146808 4.60E-92 dispersed
Cam10g2162 Cam-Chr10:35118581 Cam07g1057 Cam-Chr7:24920524 3.10E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85530 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2162 - - - 0.0