Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2167 ATGCCTGATTTTTTCCTGGTTGGGTTCGTACCGTACTGTGTGTTGCAGTTGCAGCAGAACATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTACGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCTATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGGATCGGCTGACGTGGGGGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCCGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCGTTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGTCGACGATTTCGGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTTCATTCCTTTGGTCTTTGGTTGGTGGTTACTCTGGCTTTCTTGCATATCTCCCTGCCTTGTAAGCAATTCAGACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGGTAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAGTTCCTGCCGACGTCGGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCTGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTATTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGCAATAAGAACAGTAATAAAGGTGGAAGGAGTTAAAGGACTTTGGAAAGGCAACTTTCCTCAGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAAATTTCAAGAACCTTTTCAGGGGAGAAGATGGAGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTTATGACATATCCATTAGATGTTTTGAGGTTGCGTATGGCAGTTGACCCTGGGTTTCGAACGGCATCTGAGATTGCCTTAAGTATGCTACGAGAGGAAGGCATTACATCTTACTACAGTGGTCTTGGACCATCCCTTTTTGGCATAGCTCCTTACATTGCCGTGAACTTTTGCATTTTTGACTTGGTAAAAAAGTCTTTGCCAGAGGAAGCTCAAAGGAGAACTGAAACATCTTTATTCACAGCCTTGCTTTCGGCTTCCCTAGCTACACTCATGTGCTATCCTTTGGACACTGTGAGAAGACAGATGCAAATGAAGGGTACACCTTACAATACAGTTTTAGATGCTTTTGCAGGTATATGGGCTGGTGATGGATTTGTTGGATTCTACAGGGGCTTGCTGCCCAACTTCTTGAAGAATTTACCAAGCAGCAGCATCAAGCTTACCACATATGACTTTGTCAAGCGTCTTATTGAAACTAGTGAAAATGAGTACCAGAGAATCATTGACGAAAATCGCGAAAAGCTTAACCAAAAGTTCACTGATTAA 2634 45.67 MPDFFLVGFVPYCVLQLQQNMDFEQGTSILQNGVVKGSLRHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTSLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCYSLPMLFPYAGGSADVGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINVDDFGFRFVRFVQRICFIPLVFGWWLLWLSCISPCLVSNSDSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSGNDGDGTSCKFACITVVEKRNRKEFLPTSAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLIMQTHGARIAQEGAKKSIGFIEAIRTVIKVEGVKGLWKGNFPQVIRIIPYSAIQLFAYENFKNLFRGEDGELSVIGRLAAGACAGMTSTFMTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFGIAPYIAVNFCIFDLVKKSLPEEAQRRTETSLFTALLSASLATLMCYPLDTVRRQMQMKGTPYNTVLDAFAGIWAGDGFVGFYRGLLPNFLKNLPSSSIKLTTYDFVKRLIETSENEYQRIIDENREKLNQKFTD 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35147416 35161113 - CaPI482276_10g021670.1 Cam10g2167 138830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 734 752 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 777 799 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 583 596 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 693 711 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 645 665 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 PRINTS Mitochondrial carrier protein signature 596 610 IPR002067 GO:0055085(InterPro)
Cam10g2167 877 Pfam Mitochondrial carrier protein 677 764 IPR018108 -
Cam10g2167 877 Pfam Mitochondrial carrier protein 583 673 IPR018108 -
Cam10g2167 877 Pfam Mitochondrial carrier protein 773 855 IPR018108 -
Cam10g2167 877 Gene3D - 135 276 IPR044880 -
Cam10g2167 877 Gene3D - 279 439 IPR044880 -
Cam10g2167 877 Gene3D Mitochondrial carrier domain 579 853 IPR023395 -
Cam10g2167 877 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 440 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cam10g2167 877 ProSiteProfiles Solute carrier (Solcar) repeat profile. 578 670 IPR018108 -
Cam10g2167 877 FunFam Vacuolar cation/proton exchanger 283 439 - -
Cam10g2167 877 ProSiteProfiles Solute carrier (Solcar) repeat profile. 768 852 IPR018108 -
Cam10g2167 877 FunFam Envelope ADP,ATP carrier protein 580 858 - -
Cam10g2167 877 ProSiteProfiles Solute carrier (Solcar) repeat profile. 678 761 IPR018108 -
Cam10g2167 877 NCBIfam calcium/proton exchanger 91 438 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cam10g2167 877 Pfam Sodium/calcium exchanger protein 108 264 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2167 877 Pfam Sodium/calcium exchanger protein 295 437 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g2167 877 SUPERFAMILY Mitochondrial carrier 582 849 IPR023395 -
Cam10g2167 877 Coils Coil 853 873 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2182 Cam-Chr8:27184386 Cam10g2167 Cam-Chr10:35147416 1.50E-38 dispersed
Cam09g0638 Cam-Chr9:6276810 Cam10g2167 Cam-Chr10:35147416 6.00E-16 dispersed
Cam10g0392 Cam-Chr10:6250148 Cam10g2167 Cam-Chr10:35147416 1.60E-92 dispersed
Cam10g2167 Cam-Chr10:35147416 Cam10g2188 Cam-Chr10:35335101 2.40E-14 dispersed
Cam04g0715 Cam-Chr4:21521518 Cam10g2167 Cam-Chr10:35147416 1.80E-145 transposed
Cam04g1190 Cam-Chr4:25984541 Cam10g2167 Cam-Chr10:35147416 1.50E-27 transposed
Cam07g0358 Cam-Chr7:4832285 Cam10g2167 Cam-Chr10:35147416 6.20E-38 transposed
Cam10g2167 Cam-Chr10:35147416 Cam03g0076 Cam-Chr3:1726218 3.60E-119 wgd
Cam10g2167 Cam-Chr10:35147416 Cam04g0714 Cam-Chr4:21511717 1.30E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2167 K07300 - csv:101213421 671.003