Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2172 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTAGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGTTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 726 45.59 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35194335 35196633 + CaPI482276_10g021720.1 Cam10g2172 138835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2172 241 MobiDBLite consensus disorder prediction 164 178 - -
Cam10g2172 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cam10g2172 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 235 IPR013083 -
Cam10g2172 241 FunFam PHD finger alfin-like protein 180 236 - -
Cam10g2172 241 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cam10g2172 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cam10g2172 241 PANTHER CPG BINDING PROTEIN 8 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cam10g2172 241 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
Cam10g2172 241 MobiDBLite consensus disorder prediction 136 178 - -
Cam10g2172 241 Pfam PHD-finger 188 234 IPR019787 -
Cam10g2172 241 SMART PHD_3 187 235 IPR001965 -
Cam10g2172 241 MobiDBLite consensus disorder prediction 147 163 - -
Cam10g2172 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0706 Cam-Chr10:11447040 Cam10g2172 Cam-Chr10:35194335 3.70E-81 dispersed
Cam10g2172 Cam-Chr10:35194335 Cam11g0168 Cam-Chr11:3264846 2.70E-85 dispersed
Cam10g2172 Cam-Chr10:35194335 Cam07g0425 Cam-Chr7:5746385 2.30E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52831 PF12165 Alfin 6.30E-67 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2172 K26274 - csv:101211970 464.536