Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2176 ATGGAAGGCCATAATCCTCATCCTCATCCTCATCCCCATCCCCTTATTCAGCTCCACCAGCAGCAACAAATTCAACTTCCTCCGCCACCGCCGCATCTCCACCAGAGCCTCGCCGTCTCCGCCGATCAAACCACAGCAACAGCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCCGAGCTGGATCAAACCTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGCAAATGGAAAAACCTCGTCACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGTTACAAGCAATATTTGGGGCAAGAATGCAAAGAATATTATGGGCAGAGGCGGAGAGCGGCGGTAGCGGGTCGAAGAAGAAGACGTTACCATTATCGTCTGACGATGACGAAGAAAACGACGATAGCGATGGCGATGGAGGCGAGACAAAAGTTAGCGGTAGGAAGAGGAAAAAAGTTAAAGGAATGGGCGGTACGACGACGGGAGGCGGCGAGGGCAGTGGAAAGAGTAGTATCAATGATTTGAAAGAAATGTTGGAAGATTTTATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAATGGAGAAGAAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGGAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA 915 45.14 MEGHNPHPHPHPHPLIQLHQQQQIQLPPPPPHLHQSLAVSADQTTATAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILWAEAESGGSGSKKKTLPLSSDDDEENDDSDGDGGETKVSGRKRKKVKGMGGTTTGGGEGSGKSSINDLKEMLEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35241476 35242581 + CaPI482276_10g021760.1 Cam10g2176 138839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2176 304 Gene3D - 55 116 - -
Cam10g2176 304 Coils Coil 248 275 - -
Cam10g2176 304 MobiDBLite consensus disorder prediction 152 212 - -
Cam10g2176 304 Coils Coil 212 232 - -
Cam10g2176 304 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Cam10g2176 304 FunFam Zinc finger and SCAN domain-containing 20 55 116 - -
Cam10g2176 304 CDD GT1 53 118 - -
Cam10g2176 304 Pfam Myb/SANT-like DNA-binding domain 54 138 IPR044822 -
Cam10g2176 304 PANTHER FI21293P1 28 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1426 Cam-Chr7:28830956 Cam10g2176 Cam-Chr10:35241476 1.80E-24 transposed
Cam10g2176 Cam-Chr10:35241476 Cam04g0711 Cam-Chr4:21433368 5.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52832 PF13837 Myb_DNA-bind_4 2.40E-18 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2176 - - - 0.0