Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2176 | ATGGAAGGCCATAATCCTCATCCTCATCCTCATCCCCATCCCCTTATTCAGCTCCACCAGCAGCAACAAATTCAACTTCCTCCGCCACCGCCGCATCTCCACCAGAGCCTCGCCGTCTCCGCCGATCAAACCACAGCAACAGCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCCGAGCTGGATCAAACCTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGCAAATGGAAAAACCTCGTCACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGTTACAAGCAATATTTGGGGCAAGAATGCAAAGAATATTATGGGCAGAGGCGGAGAGCGGCGGTAGCGGGTCGAAGAAGAAGACGTTACCATTATCGTCTGACGATGACGAAGAAAACGACGATAGCGATGGCGATGGAGGCGAGACAAAAGTTAGCGGTAGGAAGAGGAAAAAAGTTAAAGGAATGGGCGGTACGACGACGGGAGGCGGCGAGGGCAGTGGAAAGAGTAGTATCAATGATTTGAAAGAAATGTTGGAAGATTTTATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAATGGAGAAGAAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGGAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA | 915 | 45.14 | MEGHNPHPHPHPHPLIQLHQQQQIQLPPPPPHLHQSLAVSADQTTATAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILWAEAESGGSGSKKKTLPLSSDDDEENDDSDGDGGETKVSGRKRKKVKGMGGTTTGGGEGSGKSSINDLKEMLEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35241476 | 35242581 | + | CaPI482276_10g021760.1 | Cam10g2176 | 138839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2176 | 304 | Gene3D | - | 55 | 116 | - | - | |
Cam10g2176 | 304 | Coils | Coil | 248 | 275 | - | - | |
Cam10g2176 | 304 | MobiDBLite | consensus disorder prediction | 152 | 212 | - | - | |
Cam10g2176 | 304 | Coils | Coil | 212 | 232 | - | - | |
Cam10g2176 | 304 | ProSiteProfiles | Myb-like domain profile. | 55 | 111 | IPR001005 | - | |
Cam10g2176 | 304 | FunFam | Zinc finger and SCAN domain-containing 20 | 55 | 116 | - | - | |
Cam10g2176 | 304 | CDD | GT1 | 53 | 118 | - | - | |
Cam10g2176 | 304 | Pfam | Myb/SANT-like DNA-binding domain | 54 | 138 | IPR044822 | - | |
Cam10g2176 | 304 | PANTHER | FI21293P1 | 28 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam07g1426 | Cam-Chr7:28830956 | Cam10g2176 | Cam-Chr10:35241476 | 1.80E-24 | transposed | |
Cam10g2176 | Cam-Chr10:35241476 | Cam04g0711 | Cam-Chr4:21433368 | 5.40E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52832 | PF13837 | Myb_DNA-bind_4 | 2.40E-18 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2176 | - | - | - | 0.0 |