Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2202 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAAATCACCAAATACGAACAGAAAATTCAAGAATCAACAATGGAAAAGCTGTTCTTCATACCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCACGAACTCATCGATCTAAAAGGAGCTTTGCATAGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGCCAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCGACAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCGGTCCCTGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGGACCGTCCCAGACTCTTGGGGAGGTCCTGGAAATAGAACTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCCATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCATGAGATTTCCATCGGGGACAATAAGATCTCTGGGGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACGCCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTCGAAAATAATAGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACTTCTTTCAATGTCTCCTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTATCGAATAAGTTCAACGCGAGCTCTTTCGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGAAACCACATCGTCACCGCAGACTTAGTCTGAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAAGCATCGAGAAGGCAGCACCAGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCGGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGCACTCGGAAAGATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2574 44.44 MGKSHNPLSEFQVHPLQFMQILAPKTADWCSKSPNTNRKFKNQQWKSCSSYLIALFFAHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNMISGAVPRSLGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGPGNRTCPLGVLTLDHNAIYGAIPASLSKLEWLHEISIGDNKISGAIPSEIGRLKRLRLLDLSNNAISGGFPSSFSNLSSLESLNVENNSLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPHNITTPSTEVLKPHRHRRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARSIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35427424 35430187 - CaPI482276_10g022020.1 Cam10g2202 138865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2202 857 SMART LRR_typ_2 413 436 IPR003591 -
Cam10g2202 857 SMART LRR_typ_2 145 168 IPR003591 -
Cam10g2202 857 SMART LRR_typ_2 341 365 IPR003591 -
Cam10g2202 857 SMART LRR_typ_2 317 340 IPR003591 -
Cam10g2202 857 SMART LRR_typ_2 169 192 IPR003591 -
Cam10g2202 857 SMART LRR_typ_2 193 217 IPR003591 -
Cam10g2202 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 230 - -
Cam10g2202 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2202 857 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Cam10g2202 857 Gene3D Transferase(Phosphotransferase) domain 1 647 853 - -
Cam10g2202 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 271 338 - -
Cam10g2202 857 CDD STKc_IRAK 575 840 - -
Cam10g2202 857 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Cam10g2202 857 Pfam Leucine Rich Repeat 343 365 IPR001611 GO:0005515(InterPro)
Cam10g2202 857 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Cam10g2202 857 Pfam Leucine Rich Repeat 320 341 IPR001611 GO:0005515(InterPro)
Cam10g2202 857 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Cam10g2202 857 Pfam Leucine Rich repeats (2 copies) 170 207 IPR025875 -
Cam10g2202 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Cam10g2202 857 PRINTS Leucine-rich repeat signature 196 209 - -
Cam10g2202 857 PRINTS Leucine-rich repeat signature 317 330 - -
Cam10g2202 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 296 845 IPR052451 -
Cam10g2202 857 Gene3D Ribonuclease Inhibitor 227 333 IPR032675 -
Cam10g2202 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cam10g2202 857 FunFam Pollen receptor-like kinase 1 646 851 - -
Cam10g2202 857 SUPERFAMILY L domain-like 106 450 - -
Cam10g2202 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
Cam10g2202 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2202 857 FunFam Leucine-rich repeat receptor-like protein kinase 555 645 - -
Cam10g2202 857 Gene3D Ribonuclease Inhibitor 79 226 IPR032675 -
Cam10g2202 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2202 Cam-Chr10:35427424 Cam11g0283 Cam-Chr11:4305745 5.40E-75 dispersed
Cam01g1968 Cam-Chr1:32972608 Cam10g2202 Cam-Chr10:35427424 2.20E-46 transposed
Cam03g0824 Cam-Chr3:9691310 Cam10g2202 Cam-Chr10:35427424 4.10E-56 transposed
Cam03g1435 Cam-Chr3:29231402 Cam10g2202 Cam-Chr10:35427424 3.00E-56 transposed
Cam07g0481 Cam-Chr7:6738384 Cam10g2202 Cam-Chr10:35427424 5.30E-168 transposed
Cam09g0904 Cam-Chr9:9316202 Cam10g2202 Cam-Chr10:35427424 1.10E-67 transposed
Cam10g2202 Cam-Chr10:35427424 Cam07g0452 Cam-Chr7:6276758 2.50E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85534 PF07714 PK_Tyr_Ser-Thr 1.30E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2202 - - - 0.0