Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2212 ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCCACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGGTTTACGATCCATCCTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCAGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATACCGGTGAGGCCGGCTGCCATCGGTAGTCATTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATAGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1428 45.66 MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLPPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPIPVRPAAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35470895 35473628 + CaPI482276_10g022120.1 Cam10g2212 138875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2212 475 SMART WRKY_cls 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 SMART WRKY_cls 318 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 MobiDBLite consensus disorder prediction 276 290 - -
Cam10g2212 475 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 Gene3D WRKY domain 305 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 MobiDBLite consensus disorder prediction 1 24 - -
Cam10g2212 475 MobiDBLite consensus disorder prediction 228 275 - -
Cam10g2212 475 SUPERFAMILY WRKY DNA-binding domain 166 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 FunFam WRKY transcription factor 159 229 - -
Cam10g2212 475 Gene3D WRKY domain 156 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 MobiDBLite consensus disorder prediction 219 299 - -
Cam10g2212 475 FunFam WRKY transcription factor 33 305 371 - -
Cam10g2212 475 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2212 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 383 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0015 Cam-Chr3:1142483 Cam10g2212 Cam-Chr10:35470895 6.20E-91 dispersed
Cam10g2031 Cam-Chr10:34158935 Cam10g2212 Cam-Chr10:35470895 2.00E-47 dispersed
Cam10g2212 Cam-Chr10:35470895 Cam11g0481 Cam-Chr11:6338641 9.60E-66 dispersed
Cam10g2212 Cam-Chr10:35470895 Cam05g2592 Cam-Chr5:33567905 2.80E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52833 PF03106 WRKY 9.50E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2212 K13424 - csv:101205651 787.719