Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2212 | ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCCACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGGTTTACGATCCATCCTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCAGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATACCGGTGAGGCCGGCTGCCATCGGTAGTCATTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATAGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG | 1428 | 45.66 | MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLPPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPIPVRPAAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35470895 | 35473628 | + | CaPI482276_10g022120.1 | Cam10g2212 | 138875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2212 | 475 | SMART | WRKY_cls | 169 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | SMART | WRKY_cls | 318 | 377 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | MobiDBLite | consensus disorder prediction | 276 | 290 | - | - | |
Cam10g2212 | 475 | ProSiteProfiles | WRKY domain profile. | 313 | 378 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | Gene3D | WRKY domain | 305 | 371 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cam10g2212 | 475 | MobiDBLite | consensus disorder prediction | 228 | 275 | - | - | |
Cam10g2212 | 475 | SUPERFAMILY | WRKY DNA-binding domain | 166 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | Pfam | WRKY DNA -binding domain | 170 | 225 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | Pfam | WRKY DNA -binding domain | 320 | 376 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | SUPERFAMILY | WRKY DNA-binding domain | 310 | 378 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | FunFam | WRKY transcription factor | 159 | 229 | - | - | |
Cam10g2212 | 475 | Gene3D | WRKY domain | 156 | 229 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | MobiDBLite | consensus disorder prediction | 219 | 299 | - | - | |
Cam10g2212 | 475 | FunFam | WRKY transcription factor 33 | 305 | 371 | - | - | |
Cam10g2212 | 475 | ProSiteProfiles | WRKY domain profile. | 164 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2212 | 475 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 104 | 383 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0015 | Cam-Chr3:1142483 | Cam10g2212 | Cam-Chr10:35470895 | 6.20E-91 | dispersed | |
Cam10g2031 | Cam-Chr10:34158935 | Cam10g2212 | Cam-Chr10:35470895 | 2.00E-47 | dispersed | |
Cam10g2212 | Cam-Chr10:35470895 | Cam11g0481 | Cam-Chr11:6338641 | 9.60E-66 | dispersed | |
Cam10g2212 | Cam-Chr10:35470895 | Cam05g2592 | Cam-Chr5:33567905 | 2.80E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52833 | PF03106 | WRKY | 9.50E-25 | CL0274 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2212 | K13424 | - | csv:101205651 | 787.719 |