Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2233 ATGCGTTTTAGATGCTTGTTCAACTATGGAAATAAGAATCAAGTTCCAGAGTCCAAGTTAGATAAAGACCCCATGGATTTTTGTTATTGCTTTCTTTTCTCGCGGATAAAGTTTCCTCGGAAATTTTGGCGTCAACTATGTTCTACTGATTGCAAACCAGGAAATGTGAATGACTGTATGAGTTGTAACGAGAAGAATAGAGGGGTAGATGATAGGGAAACTGAGCAGCCAGTTTTTAGGAACTCTGTCGAGGCACAACGGATACCAGCCATCCAGAATGGATCCATAACGGCCCAACAGTTGACGATTGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGTGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCTCTTGAAAATCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTGATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCAGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGATCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCTGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGTGACATATCTCCGGATTTAGCATTTATAGTACAGTCATGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTGTTTACACTCCCAACTCCTTCACCATCTTCACCATCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATGA 1317 42.82 MRFRCLFNYGNKNQVPESKLDKDPMDFCYCFLFSRIKFPRKFWRQLCSTDCKPGNVNDCMSCNEKNRGVDDRETEQPVFRNSVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPQMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPTPSPSSPSSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35605944 35609700 + CaPI482276_10g022330.1 Cam10g2233 138896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2233 438 CDD STKc_MAP3K-like 120 375 - -
Cam10g2233 438 FunFam Kinase suppressor of Ras 1 103 193 - -
Cam10g2233 438 Gene3D Transferase(Phosphotransferase) domain 1 197 406 - -
Cam10g2233 438 SUPERFAMILY Protein kinase-like (PK-like) 113 404 IPR011009 -
Cam10g2233 438 PRINTS Tyrosine kinase catalytic domain signature 346 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 SMART serkin_6 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 MobiDBLite consensus disorder prediction 386 412 - -
Cam10g2233 438 ProSitePatterns Protein kinases ATP-binding region signature. 120 141 IPR017441 GO:0005524(InterPro)
Cam10g2233 438 PANTHER SERINE-THREONINE PROTEIN KINASE 93 376 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam10g2233 438 Pfam Protein tyrosine and serine/threonine kinase 116 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 Gene3D Phosphorylase Kinase; domain 1 102 193 - -
Cam10g2233 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2233 438 MobiDBLite consensus disorder prediction 393 412 - -
Cam10g2233 438 ProSiteProfiles Protein kinase domain profile. 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1981 Cam-Chr9:34470023 Cam10g2233 Cam-Chr10:35605944 2.70E-113 dispersed
Cam10g1299 Cam-Chr10:26466765 Cam10g2233 Cam-Chr10:35605944 2.40E-114 dispersed
Cam10g2233 Cam-Chr10:35605944 Cam11g1142 Cam-Chr11:22404977 7.50E-65 dispersed
Cam10g2233 Cam-Chr10:35605944 Cam06g1889 Cam-Chr6:29923654 6.00E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85535 PF07714 PK_Tyr_Ser-Thr 1.00E-61 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2233 - - - 0.0