Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2243 ATGATGGCCGGAAAACCATATATTTTTCTCTCCCTTTGTTTTATTCTTTCTGTCTCCACTTTGGGTAGATTTGTTGTCGAGAAGAACAGCTTGAAGATAACTTCCCCAGATTCCATCAAGGGTGTTTACGAATGTGCGATTGGGAATTTTGGGGTTCCTGAATATGGAGGCACAATGACTGGCATCGTGCATTATCCTAAAGCCAATCAGAAGGCATGCAAGAGCTTTGAGGATGCCGGTATCTCTTTCAAGTCCAAACCTGGAAGTCTCCCTACCTTTGTTCTTGCCGATCGAGGAGATTGTTACTTCACCACGAAGGCGTGGAATGCACAAAATGGTGGAGCTGCAGCAATTCTTGTTGCAGATGATAGACTTGAACCGTTGATTACCATGGACTCTCCAGAACAAGAGAAGGCAGATGCCAATTACCTAAAAGACATTACCATACCTTCTGCTCTTATTAGCAAAAGCTTGGGGGATGCCATCAAGAAAGCTCTATCTAGTGGAGAGATGGTTAATATAAATCTTGATTGGACAGAAGCTCTTCCACATCCTGATGATCGAGTTGAGTATGAATTTTGGACAAATAGTAATGATGAGTGTGGGCCAAAGTGTGATAGTCAGATTGAGTTTGTGAAAAACTTCAAAGGAGCTGCTCAGACGCTTGAGCAGAAAGGGTACACTCAATTTACTCCCCATTATATAACTTGGTATTGCCCAGATGCTTTTACTTTGAGTAAGCAATGCAAATCTCAATGCATCAATCATGGGAGATACTGTGCACCAGATCCCGAACAGGATTTCAGTAAAGGATATGATGGAAAGGATGTGGTTGTTCAAAATCTACGCCAAATCTGTTTCTTTAAAGTTGCAAATGAATCTGGAAAACCTTGGCTTTGGTGGGATTATGTCACTGACTTTTCAATCCGTTGTCCTATGAAAGAAAACAAGTACGATGAGGAATGTGCCAATGAAGTTATTAAATCGTTTGGTATGGATCTTAACAAGATAAAAGAATGTATTGGAGATCCAGAGGCAGATGTGGAGAACCCAATTCTTAAAGCTGAACAGGATGCACAGATTGGTAGGGGTTCCCGTGGAGATGTTACTATATTGCCGACTCTTGTTATAAATAACAGACAGTATAGAGGCAAGCTGGATAAAGGAGCAGTCCTGAAAGGCATTTGTTCTGGTTTTCAGGAGACAACAGAGCCTGCAATTTGTTTAACTGAAGACGTGGAAACAAATGAGTGTTTAACAAATAATGGTGGTTGCTGGCACAATAAGGATGCAAATGTTTCTGCATGCAGGGATACATTTCGAGGAAGAGTTTGTGAATGTCCTACTGTTCGAGGTGTGAAGTTCATTGGAGATGGCTATACTCACTGTGAACCGTCAGGAGCTTTACGCTGTGAAATAAATAATGGGGGTTGTTGGAAGGGCACCCAAGATGGAAGAACTTACTCTGCCTGTTCTGATGACCATACAAAGGGCTGCAAGTGCCCTCCAGGATTTAAAGGCGATGGAGTCCGCAATTGTGAAGATGTGGATGAGTGCACGGAGAAGCTAGCATGCCAGTGCCCAGAGTGCAAATGTCAGAATACATGGGGCAGCTATGATTGCAGTTGCAGAAATGGTTTGCTGTATATGCACGAACATGATACATGTATAGGTAGCATGGGAAACACTGTGACAAGCTGGAGCGTTGTAAAGATTACTGTCCTTGTGTTAGCCATTACTGGGATCGCGGGATATGCAGTTTACAAGTACAGAATCCGGAGGTATATGGATTCTGAGATACGGGCTATCATGGCTCAATATATGCCCTTGGACAATCAAGGAGAGACTTCTAATCAGCATTTGCCATTTGGTTCCTCTGGGAAGAGGCTTGATTGGAGAAGCATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAGCTCCTGCTTCCGTTTCTGCTTTGGACACTATTTTCAACGACGACGTTTTGGGATTGATAGTGTTCAAAGCTGGCCTTCAAGACCCTATGGGTAAATTGGTCACATGGAACGAAGACGATGAAACTCCCTGCAATTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATTGATCGTGGACTCCTAAGGTTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCTCACCTTGTAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGATTCTTAACTTCTCCTCCAACCACCTTTCTGGAAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTCTGGATTTCTCTAACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTACTTCTAAAATCAATCGATTTTAGTGAGAATATCCTTTCGGGTGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTACATGGATCTTTAGGGCAGCTATGCCAAGTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCCCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCCAGAAACCATCTCGTGGGTTCTATTCCGGGGAGCATTGGTGAACTAAAATCAGCATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGCATTCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGCTGAAGAAGAACTCCCTCACTGGGGAAATCCCAGTCAACATTGACAAATGCTCCTTGTTAACGTCATTGATTCTTTCTCACAACAACCTAACAGGCTCAATTCCTGCTTCCGTTGCAAACCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATTGTCCTAAACCCAAATTCTTCTGATACCAATGGAAATTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATAATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTGTCTGCCGGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCATCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTCGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAGTATCATTCACTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCCTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCAAACTTCCGTATTGAAGAGGCCATTCCTGTAATGAAACTAGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTGGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTGACGAGGAGTTGGAATGA 4785 43.22 MMAGKPYIFLSLCFILSVSTLGRFVVEKNSLKITSPDSIKGVYECAIGNFGVPEYGGTMTGIVHYPKANQKACKSFEDAGISFKSKPGSLPTFVLADRGDCYFTTKAWNAQNGGAAAILVADDRLEPLITMDSPEQEKADANYLKDITIPSALISKSLGDAIKKALSSGEMVNINLDWTEALPHPDDRVEYEFWTNSNDECGPKCDSQIEFVKNFKGAAQTLEQKGYTQFTPHYITWYCPDAFTLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQICFFKVANESGKPWLWWDYVTDFSIRCPMKENKYDEECANEVIKSFGMDLNKIKECIGDPEADVENPILKAEQDAQIGRGSRGDVTILPTLVINNRQYRGKLDKGAVLKGICSGFQETTEPAICLTEDVETNECLTNNGGCWHNKDANVSACRDTFRGRVCECPTVRGVKFIGDGYTHCEPSGALRCEINNGGCWKGTQDGRTYSACSDDHTKGCKCPPGFKGDGVRNCEDVDECTEKLACQCPECKCQNTWGSYDCSCRNGLLYMHEHDTCIGSMGNTVTSWSVVKITVLVLAITGIAGYAVYKYRIRRYMDSEIRAIMAQYMPLDNQGETSNQHLPFGSSGKRLDWRSMLFKLFLILVLALAPASVSALDTIFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLVNLQVIDFSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGLQSLDFSNNLLEGQIPPGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWIFRAAMPSVPFSSYRLGENLSSPAPFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSAYALDFSDNQLNGSIPAEIGGAISLKELRLKKNSLTGEIPVNIDKCSLLTSLILSHNNLTGSIPASVANLSNLEDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSAGEDFSCSPKTNPDYGKLIMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNSIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEQCVDERLQSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE 1594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35656857 35667611 - CaPI482276_10g022430.1 Cam10g2243 138906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2243 1594 SUPERFAMILY L domain-like 677 988 - -
Cam10g2243 1594 Gene3D - 22 185 - -
Cam10g2243 1594 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 639 1581 IPR050647 -
Cam10g2243 1594 CDD EGF_CA 515 546 - -
Cam10g2243 1594 Gene3D Transferase(Phosphotransferase) domain 1 1388 1593 - -
Cam10g2243 1594 Gene3D Laminin 468 557 - -
Cam10g2243 1594 Gene3D Ribonuclease Inhibitor 816 915 IPR032675 -
Cam10g2243 1594 SMART LRR_typ_2 919 943 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 847 871 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 726 749 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 1037 1061 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 1157 1181 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 823 846 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 750 774 IPR003591 -
Cam10g2243 1594 SMART LRR_typ_2 1133 1156 IPR003591 -
Cam10g2243 1594 ProSiteProfiles Protein kinase domain profile. 1311 1583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2243 1594 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1388 1589 - -
Cam10g2243 1594 SUPERFAMILY PA domain 93 169 IPR046450 -
Cam10g2243 1594 Gene3D Phosphorylase Kinase; domain 1 1301 1387 - -
Cam10g2243 1594 Pfam Leucine Rich Repeat 921 943 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 752 771 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 1039 1061 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 1016 1037 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 899 919 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 826 847 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 1112 1133 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 1135 1157 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 801 823 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Pfam Leucine Rich Repeat 729 750 IPR001611 GO:0005515(InterPro)
Cam10g2243 1594 Gene3D Laminin 408 458 - -
Cam10g2243 1594 SMART egfca_6 515 557 IPR001881 GO:0005509(InterPro)
Cam10g2243 1594 CDD STKc_IRAK 1317 1583 - -
Cam10g2243 1594 Pfam Protein tyrosine and serine/threonine kinase 1313 1579 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2243 1594 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 660 938 - -
Cam10g2243 1594 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 939 1207 - -
Cam10g2243 1594 SUPERFAMILY L domain-like 937 1192 - -
Cam10g2243 1594 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1305 1387 - -
Cam10g2243 1594 SUPERFAMILY Protein kinase-like (PK-like) 1315 1583 IPR011009 -
Cam10g2243 1594 Gene3D Ribonuclease Inhibitor 998 1206 IPR032675 -
Cam10g2243 1594 FunFam Vacuolar-sorting receptor 1 21 185 - -
Cam10g2243 1594 FunFam vacuolar-sorting receptor 1 408 464 - -
Cam10g2243 1594 Pfam Leucine rich repeat N-terminal domain 660 699 IPR013210 -
Cam10g2243 1594 ProSitePatterns Protein kinases ATP-binding region signature. 1317 1340 IPR017441 GO:0005524(InterPro)
Cam10g2243 1594 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509(InterPro)
Cam10g2243 1594 Gene3D Ribonuclease Inhibitor 918 996 IPR032675 -
Cam10g2243 1594 Gene3D Ribonuclease Inhibitor 660 815 IPR032675 -
Cam10g2243 1594 Pfam PA domain 65 162 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0713 Cam-Chr2:8479366 Cam10g2243 Cam-Chr10:35656857 3.10E-274 dispersed
Cam07g0523 Cam-Chr7:7616067 Cam10g2243 Cam-Chr10:35656857 8.40E-159 dispersed
Cam07g1598 Cam-Chr7:30651384 Cam10g2243 Cam-Chr10:35656857 9.60E-23 dispersed
Cam08g0814 Cam-Chr8:10500811 Cam10g2243 Cam-Chr10:35656857 4.70E-07 dispersed
Cam10g0328 Cam-Chr10:5430845 Cam10g2243 Cam-Chr10:35656857 4.20E-83 dispersed
Cam10g1020 Cam-Chr10:22564692 Cam10g2243 Cam-Chr10:35656857 6.30E-262 dispersed
Cam10g2243 Cam-Chr10:35656857 Cam11g1739 Cam-Chr11:29983053 1.50E-51 dispersed
Cam10g2243 Cam-Chr10:35656857 Cam11g0589 Cam-Chr11:7435909 1.80E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85537 PF07714 PK_Tyr_Ser-Thr 2.60E-41 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2243 - - - 0.0