Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2256 ATGTCACCTGTGCAAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGACACAAGCGGTTCTTTCACTGATCCCCGCGATTCTGCGGCGCTGGAATCCCTGAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGGCTTGCATCAATTCAAGAGTCACGGCACTGAGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCCAACCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGGAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCCAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACACTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAATTTTTCTGGGAATATCCCACCGACACTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTAGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCACCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCATTGAATTTGGGTCAATTCGAGGACCTGTGCCAGAAGGAGTGTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAATAATGCATTTAGTGACACATTTAATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATACACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTCTCAAATACAAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCAACCAGCCTTGCCAGTTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAACGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACACCGGGTTCAGTTTCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAGATGCAAATTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGGTTTTGCAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCATTCTAGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGGGGCGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGACTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGCGAAAAGGGACACGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGACTCAACAATTGACGGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAAGAATATTATGGTCTGAAGCAGATAATGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGAATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTATAATGATTCTATACCAAAAAAGGATGCTAATGACAGCAATGCTTTTGATTACAGTGGTGGATACACTCATTCGACAAAAGTGGAGCCCAAATAG 2901 42.09 MSPVQTLLLFAFFYAGIDTSGSFTDPRDSAALESLKNEWQNTPPSWGASNDPCGAPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSTSQSSGLDLLLKAKHFHFNKNQLSGSISPKLFSSEMVLIHILFDGNNFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYLDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSIRGPVPEGVFSLPQIQQIKLKNNAFSDTFNMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQIALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTARGTSISPGVIIGVAIGCAFLILGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDVTIINNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDSIPKKDANDSNAFDYSGGYTHSTKVEPK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35750819 35759043 + CaPI482276_10g022560.1 Cam10g2256 138919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2256 966 Gene3D Transferase(Phosphotransferase) domain 1 707 930 - -
Cam10g2256 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2256 966 Gene3D Ribonuclease Inhibitor 219 283 IPR032675 -
Cam10g2256 966 MobiDBLite consensus disorder prediction 912 927 - -
Cam10g2256 966 CDD STKc_IRAK 637 905 - -
Cam10g2256 966 FunFam Leucine-rich repeat protein kinase family protein 600 706 - -
Cam10g2256 966 Gene3D Ribonuclease Inhibitor 25 218 IPR032675 -
Cam10g2256 966 FunFam Predicted protein 186 405 - -
Cam10g2256 966 Gene3D Ribonuclease Inhibitor 284 423 IPR032675 -
Cam10g2256 966 SMART serkin_6 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2256 966 SUPERFAMILY Protein kinase-like (PK-like) 616 916 IPR011009 -
Cam10g2256 966 FunFam Leucine-rich repeat family protein 27 183 - -
Cam10g2256 966 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 707 919 - -
Cam10g2256 966 MobiDBLite consensus disorder prediction 912 966 - -
Cam10g2256 966 PANTHER RECEPTOR-LIKE PROTEIN 55 39 903 - -
Cam10g2256 966 SUPERFAMILY L domain-like 38 411 - -
Cam10g2256 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524(InterPro)
Cam10g2256 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g2256 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Cam10g2256 966 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cam10g2256 966 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Cam10g2256 966 Pfam Leucine Rich Repeat 289 312 IPR001611 GO:0005515(InterPro)
Cam10g2256 966 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
Cam10g2256 966 Pfam Protein tyrosine and serine/threonine kinase 633 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1357 Cam-Chr10:27096260 Cam10g2256 Cam-Chr10:35750819 0.00E+00 dispersed
Cam10g2256 Cam-Chr10:35750819 Cam11g0552 Cam-Chr11:6992725 1.80E-71 dispersed
Cam02g0002 Cam-Chr2:1179560 Cam10g2256 Cam-Chr10:35750819 2.60E-280 transposed
Cam03g0002 Cam-Chr3:1025178 Cam10g2256 Cam-Chr10:35750819 1.20E-91 transposed
Cam04g0624 Cam-Chr4:20231248 Cam10g2256 Cam-Chr10:35750819 1.10E-99 transposed
Cam08g0694 Cam-Chr8:5472415 Cam10g2256 Cam-Chr10:35750819 5.70E-60 transposed
Cam10g2256 Cam-Chr10:35750819 Cam04g0636 Cam-Chr4:20366640 2.20E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85539 PF07714 PK_Tyr_Ser-Thr 5.80E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2256 - - - 0.0