Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0002 ATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCATTGACTATGGAAGGATAA 510 48.04 MDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAESSLTMEG 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1515069 1516229 - CaPI482276_11g000020.1 Cam11g0002 138924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0002 169 Pfam Auxin responsive protein 57 146 IPR003676 GO:0009733(InterPro)
Cam11g0002 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 147 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2829 Cam-Chr5:35370430 Cam11g0002 Cam-Chr11:1515069 9.10E-19 dispersed
Cam08g1914 Cam-Chr8:25085614 Cam11g0002 Cam-Chr11:1515069 3.50E-16 dispersed
Cam10g1847 Cam-Chr10:32574017 Cam11g0002 Cam-Chr11:1515069 1.80E-13 dispersed
Cam11g0002 Cam-Chr11:1515069 Cam11g0395 Cam-Chr11:5346909 6.10E-15 dispersed
Cam11g0002 Cam-Chr11:1515069 Cam04g1037 Cam-Chr4:24518720 2.90E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0002 K14488 - csv:101207913 327.405