Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0009 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATTCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCCCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAGCAGCAACAACAATAAGAAGCATATCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCTCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCGGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGAGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.65 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1609440 1610357 + CaPI482276_11g000090.1 Cam11g0009 138931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0009 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Cam11g0009 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cam11g0009 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Cam11g0009 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Cam11g0009 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cam11g0009 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam11g0009 305 Gene3D - 220 292 - -
Cam11g0009 305 MobiDBLite consensus disorder prediction 201 221 - -
Cam11g0009 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1893 Cam-Chr1:32420380 Cam11g0009 Cam-Chr11:1609440 2.40E-46 dispersed
Cam08g1605 Cam-Chr8:22183147 Cam11g0009 Cam-Chr11:1609440 1.50E-46 dispersed
Cam09g1873 Cam-Chr9:33307003 Cam11g0009 Cam-Chr11:1609440 4.80E-17 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam11g0009 Cam-Chr11:1609440 2.40E-36 dispersed
Cam10g1180 Cam-Chr10:25138602 Cam11g0009 Cam-Chr11:1609440 3.20E-35 dispersed
Cam11g0009 Cam-Chr11:1609440 Cam08g1972 Cam-Chr8:25579420 2.40E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52837 PF04770 ZF-HD_dimer 4.60E-29 No_clan Cam TF