Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0009 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATTCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCCCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAGCAGCAACAACAATAAGAAGCATATCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCTCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCGGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGAGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.65 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1609440 1610357 + CaPI482276_11g000090.1 Cam11g0009 138931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0009 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Cam11g0009 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cam11g0009 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Cam11g0009 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Cam11g0009 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cam11g0009 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam11g0009 305 Gene3D - 220 292 - -
Cam11g0009 305 MobiDBLite consensus disorder prediction 201 221 - -
Cam11g0009 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1893 Cam-Chr1:32420380 Cam11g0009 Cam-Chr11:1609440 2.40E-46 dispersed
Cam08g1605 Cam-Chr8:22183147 Cam11g0009 Cam-Chr11:1609440 1.50E-46 dispersed
Cam09g1873 Cam-Chr9:33307003 Cam11g0009 Cam-Chr11:1609440 4.80E-17 dispersed
Cam10g0839 Cam-Chr10:18645689 Cam11g0009 Cam-Chr11:1609440 2.40E-36 dispersed
Cam10g1180 Cam-Chr10:25138602 Cam11g0009 Cam-Chr11:1609440 3.20E-35 dispersed
Cam11g0009 Cam-Chr11:1609440 Cam08g1972 Cam-Chr8:25579420 2.40E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52837 PF04770 ZF-HD_dimer 4.60E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0009 - - - 0.0