Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0016 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACCATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAGGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTAAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGTGGGGAAGATGAAGACCGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAACGATGGGGTGCCAACTTGGATGGATAGCAGTGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTACGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGCTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.87 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPVGKMKTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSSERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1730878 1732894 + CaPI482276_11g000160.1 Cam11g0016 138938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0016 594 SMART PMEI_2 79 231 IPR006501 GO:0004857(InterPro)
Cam11g0016 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam11g0016 594 CDD PMEI-like_3 87 237 - -
Cam11g0016 594 NCBIfam pectinesterase inhibitor domain 81 235 IPR006501 GO:0004857(InterPro)
Cam11g0016 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Cam11g0016 594 MobiDBLite consensus disorder prediction 51 73 - -
Cam11g0016 594 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Cam11g0016 594 Coils Coil 154 174 - -
Cam11g0016 594 FunFam Pectinesterase 80 236 - -
Cam11g0016 594 MobiDBLite consensus disorder prediction 51 76 - -
Cam11g0016 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Cam11g0016 594 PANTHER PECTINESTERASE 26 584 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam11g0016 594 Gene3D - 278 593 IPR012334 -
Cam11g0016 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857(InterPro)
Cam11g0016 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Cam11g0016 594 FunFam Pectinesterase 278 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0729 Cam-Chr1:8143049 Cam11g0016 Cam-Chr11:1730878 5.70E-142 dispersed
Cam01g0730 Cam-Chr1:8149484 Cam11g0016 Cam-Chr11:1730878 1.60E-136 dispersed
Cam05g0734 Cam-Chr5:6389342 Cam11g0016 Cam-Chr11:1730878 1.40E-135 dispersed
Cam09g0859 Cam-Chr9:8866576 Cam11g0016 Cam-Chr11:1730878 9.30E-92 dispersed
Cam10g0006 Cam-Chr10:1694674 Cam11g0016 Cam-Chr11:1730878 1.20E-100 dispersed
Cam11g0016 Cam-Chr11:1730878 Cam11g1474 Cam-Chr11:27475114 2.70E-81 dispersed
Cam11g0016 Cam-Chr11:1730878 Cam06g0495 Cam-Chr6:7060431 2.60E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0016 - - - 0.0