Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0016 | ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACCATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAGGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTAAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGTGGGGAAGATGAAGACCGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAACGATGGGGTGCCAACTTGGATGGATAGCAGTGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTACGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGCTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA | 1785 | 50.87 | MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPVGKMKTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSSERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1730878 | 1732894 | + | CaPI482276_11g000160.1 | Cam11g0016 | 138938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0016 | 594 | SMART | PMEI_2 | 79 | 231 | IPR006501 | GO:0004857(InterPro) | |
Cam11g0016 | 594 | Pfam | Pectinesterase | 284 | 578 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Cam11g0016 | 594 | CDD | PMEI-like_3 | 87 | 237 | - | - | |
Cam11g0016 | 594 | NCBIfam | pectinesterase inhibitor domain | 81 | 235 | IPR006501 | GO:0004857(InterPro) | |
Cam11g0016 | 594 | ProSitePatterns | Pectinesterase signature 2. | 428 | 437 | IPR033131 | - | |
Cam11g0016 | 594 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - | |
Cam11g0016 | 594 | SUPERFAMILY | Pectin lyase-like | 280 | 578 | IPR011050 | - | |
Cam11g0016 | 594 | Coils | Coil | 154 | 174 | - | - | |
Cam11g0016 | 594 | FunFam | Pectinesterase | 80 | 236 | - | - | |
Cam11g0016 | 594 | MobiDBLite | consensus disorder prediction | 51 | 76 | - | - | |
Cam11g0016 | 594 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 80 | 236 | IPR035513 | - | |
Cam11g0016 | 594 | PANTHER | PECTINESTERASE | 26 | 584 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Cam11g0016 | 594 | Gene3D | - | 278 | 593 | IPR012334 | - | |
Cam11g0016 | 594 | Pfam | Plant invertase/pectin methylesterase inhibitor | 83 | 231 | IPR006501 | GO:0004857(InterPro) | |
Cam11g0016 | 594 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 82 | 235 | IPR035513 | - | |
Cam11g0016 | 594 | FunFam | Pectinesterase | 278 | 593 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0729 | Cam-Chr1:8143049 | Cam11g0016 | Cam-Chr11:1730878 | 5.70E-142 | dispersed | |
Cam01g0730 | Cam-Chr1:8149484 | Cam11g0016 | Cam-Chr11:1730878 | 1.60E-136 | dispersed | |
Cam05g0734 | Cam-Chr5:6389342 | Cam11g0016 | Cam-Chr11:1730878 | 1.40E-135 | dispersed | |
Cam09g0859 | Cam-Chr9:8866576 | Cam11g0016 | Cam-Chr11:1730878 | 9.30E-92 | dispersed | |
Cam10g0006 | Cam-Chr10:1694674 | Cam11g0016 | Cam-Chr11:1730878 | 1.20E-100 | dispersed | |
Cam11g0016 | Cam-Chr11:1730878 | Cam11g1474 | Cam-Chr11:27475114 | 2.70E-81 | dispersed | |
Cam11g0016 | Cam-Chr11:1730878 | Cam06g0495 | Cam-Chr6:7060431 | 2.60E-137 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0016 | - | - | - | 0.0 |