Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0027 ATGTCCTTTTCAGCTGTCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCACGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGGTGGGTGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATCGACACTTCATCTCATGGAGCAAACAGGGAACCCATTGAAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTATTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAATTGGAGGAGATGTTTGACATAGAGGGTGAGCTCTGTGGCTCTTCAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTTTGCAAACCAGATTCCGATACAATTGCCAACCACACGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 45.21 MSFSAVSNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWVNSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIIDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPISTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSSKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1853117 1862072 - CaPI482276_11g000270.1 Cam11g0027 138949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0027 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cam11g0027 678 Gene3D - 291 364 - -
Cam11g0027 678 MobiDBLite consensus disorder prediction 362 386 - -
Cam11g0027 678 FunFam Auxin response factor 548 642 - -
Cam11g0027 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g0027 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cam11g0027 678 Gene3D - 125 230 IPR015300 -
Cam11g0027 678 FunFam Auxin response factor 126 230 - -
Cam11g0027 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Cam11g0027 678 Gene3D - 548 642 - -
Cam11g0027 678 FunFam Auxin response factor 291 363 - -
Cam11g0027 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cam11g0027 678 Pfam AUX/IAA family 552 589 IPR033389 -
Cam11g0027 678 Pfam AUX/IAA family 598 644 IPR033389 -
Cam11g0027 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cam11g0027 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Cam11g0027 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g0027 678 MobiDBLite consensus disorder prediction 362 393 - -
Cam11g0027 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2547 Cam-Chr1:37060138 Cam11g0027 Cam-Chr11:1853117 3.80E-13 dispersed
Cam07g1412 Cam-Chr7:28640738 Cam11g0027 Cam-Chr11:1853117 1.80E-172 dispersed
Cam11g0027 Cam-Chr11:1853117 Cam11g1167 Cam-Chr11:22822635 2.60E-16 dispersed
Cam11g0027 Cam-Chr11:1853117 Cam09g0937 Cam-Chr9:9621923 7.80E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52838 PF02309 AUX_IAA 9.50E-12 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0027 K14486 - csv:101204612 1313.13