Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0080 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCACCTCCCTCTAATTCTTCCACTGCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGCGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCAAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTGGCAACACTACAGCAACGTTGCTAAGGACATTTGGGAGCTCCTCAAGCTCAGGCGGGAAGGCGACAGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCGTTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAACCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGA 1875 46.24 MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPPSNSSTAPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSGNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRTKHLAVEMETTSEEEKKENKYRQKQIFQMQQISMPANFNQ 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2486128 2489963 - CaPI482276_11g000800.1 Cam11g0080 139002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0080 624 SMART c2h2final6 119 149 IPR013087 -
Cam11g0080 624 SMART c2h2final6 154 174 IPR013087 -
Cam11g0080 624 SMART c2h2final6 78 100 IPR013087 -
Cam11g0080 624 MobiDBLite consensus disorder prediction 1 63 - -
Cam11g0080 624 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cam11g0080 624 Gene3D Classic Zinc Finger 132 211 - -
Cam11g0080 624 Gene3D Classic Zinc Finger 57 126 - -
Cam11g0080 624 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cam11g0080 624 Pfam Zinc-finger of C2H2 type 78 100 IPR013087 -
Cam11g0080 624 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cam11g0080 624 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cam11g0080 624 MobiDBLite consensus disorder prediction 362 405 - -
Cam11g0080 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cam11g0080 624 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 594 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam11g0080 624 MobiDBLite consensus disorder prediction 26 41 - -
Cam11g0080 624 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 215 - -
Cam11g0080 624 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cam11g0080 624 FunFam protein indeterminate-domain 12-like 57 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0719 Cam-Chr9:7185356 Cam11g0080 Cam-Chr11:2486128 2.20E-84 dispersed
Cam11g0080 Cam-Chr11:2486128 Cam10g2003 Cam-Chr10:33907426 2.40E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52843 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0080 K25870 - csv:101219959 944.11