Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0080 | ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCACCTCCCTCTAATTCTTCCACTGCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGCGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCAAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTGGCAACACTACAGCAACGTTGCTAAGGACATTTGGGAGCTCCTCAAGCTCAGGCGGGAAGGCGACAGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCGTTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAACCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGA | 1875 | 46.24 | MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPPSNSSTAPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSGNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRTKHLAVEMETTSEEEKKENKYRQKQIFQMQQISMPANFNQ | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2486128 | 2489963 | - | CaPI482276_11g000800.1 | Cam11g0080 | 139002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0080 | 624 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Cam11g0080 | 624 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Cam11g0080 | 624 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Cam11g0080 | 624 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cam11g0080 | 624 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 132 | 211 | - | - | |
Cam11g0080 | 624 | Gene3D | Classic Zinc Finger | 132 | 211 | - | - | |
Cam11g0080 | 624 | Gene3D | Classic Zinc Finger | 57 | 126 | - | - | |
Cam11g0080 | 624 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
Cam11g0080 | 624 | Pfam | Zinc-finger of C2H2 type | 78 | 100 | IPR013087 | - | |
Cam11g0080 | 624 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 115 | 149 | - | - | |
Cam11g0080 | 624 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Cam11g0080 | 624 | MobiDBLite | consensus disorder prediction | 362 | 405 | - | - | |
Cam11g0080 | 624 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Cam11g0080 | 624 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 34 | 594 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cam11g0080 | 624 | MobiDBLite | consensus disorder prediction | 26 | 41 | - | - | |
Cam11g0080 | 624 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 180 | 215 | - | - | |
Cam11g0080 | 624 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 153 | 177 | - | - | |
Cam11g0080 | 624 | FunFam | protein indeterminate-domain 12-like | 57 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g0719 | Cam-Chr9:7185356 | Cam11g0080 | Cam-Chr11:2486128 | 2.20E-84 | dispersed | |
Cam11g0080 | Cam-Chr11:2486128 | Cam10g2003 | Cam-Chr10:33907426 | 2.40E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52843 | PF12171 | zf-C2H2_jaz | 3.90E-05 | CL0361 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0080 | K25870 | - | csv:101219959 | 944.11 |