Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0096 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTCTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAGGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTTGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAGAACAACAACAATGGAAGTCTTTCGCTGGATGATATTTTGAAATCGACAAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTTGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTGGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACAGCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACGGCTAGTTTCTTGGCTTGATAAAGTAAGTTAA 2934 40.93 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTGLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAWGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETAMAEVLDIACLCLCKEPKERPSTQRLVSWLDKVS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2623725 2626658 - CaPI482276_11g000960.1 Cam11g0096 139018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0096 977 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cam11g0096 977 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Cam11g0096 977 SUPERFAMILY L domain-like 43 133 - -
Cam11g0096 977 Gene3D Ribonuclease Inhibitor 282 607 IPR032675 -
Cam11g0096 977 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Cam11g0096 977 PRINTS Leucine-rich repeat signature 538 551 - -
Cam11g0096 977 PRINTS Leucine-rich repeat signature 70 83 - -
Cam11g0096 977 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 190 969 IPR052592 -
Cam11g0096 977 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
Cam11g0096 977 Pfam Leucine Rich repeat 259 275 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 SUPERFAMILY L domain-like 484 599 - -
Cam11g0096 977 FunFam Leucine-rich repeat receptor-like protein kinase 778 977 - -
Cam11g0096 977 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0096 977 Gene3D Ribonuclease Inhibitor 3 281 IPR032675 -
Cam11g0096 977 Gene3D Transferase(Phosphotransferase) domain 1 778 976 - -
Cam11g0096 977 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Cam11g0096 977 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine Rich Repeat 215 233 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515(InterPro)
Cam11g0096 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0096 977 SUPERFAMILY RNI-like 140 450 - -
Cam11g0096 977 SMART LRR_typ_2 67 91 IPR003591 -
Cam11g0096 977 SMART LRR_typ_2 115 139 IPR003591 -
Cam11g0096 977 SMART LRR_typ_2 188 211 IPR003591 -
Cam11g0096 977 SMART LRR_typ_2 212 235 IPR003591 -
Cam11g0096 977 SMART LRR_typ_2 538 561 IPR003591 -
Cam11g0096 977 SMART LRR_typ_2 284 308 IPR003591 -
Cam11g0096 977 ProSiteProfiles Protein kinase domain profile. 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0096 977 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0096 977 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 610 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0719 Cam-Chr1:8053769 Cam11g0096 Cam-Chr11:2623725 6.50E-34 dispersed
Cam05g0951 Cam-Chr5:8606569 Cam11g0096 Cam-Chr11:2623725 5.80E-81 dispersed
Cam08g1331 Cam-Chr8:19612372 Cam11g0096 Cam-Chr11:2623725 6.20E-63 dispersed
Cam09g0352 Cam-Chr9:3861942 Cam11g0096 Cam-Chr11:2623725 1.40E-136 dispersed
Cam09g0778 Cam-Chr9:7907169 Cam11g0096 Cam-Chr11:2623725 2.60E-61 dispersed
Cam11g0096 Cam-Chr11:2623725 Cam11g0552 Cam-Chr11:6992725 2.20E-72 dispersed
Cam11g0096 Cam-Chr11:2623725 Cam05g1092 Cam-Chr5:9975964 5.60E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85542 PF00069 Pkinase 1.90E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0096 K27625 - csv:116404121 1650.57