Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0100 ATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCGCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAACCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTTTACTTTCGAAAGCGGAACCGACAAATCTCTGCTACCGATAAGGCCTCGAGAACTGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCTAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCACTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCACTGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCACCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACCGTGCCATCGAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCAGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGCACTGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTTGAGTACCTCAATCGGTCCTTTGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGACACCCTTCTGAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTTGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACGTCGAGTTTCGGAAGCTTGGTCTTCAAGTCGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAGAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGACGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAATGAAGACATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTGTCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTAGCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTAAAGGATTTTCTTGCAATCTTAGATCAGGTATGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCAAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGGTTCCTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2838 46.79 MPISRLCLFLAFFPLFLSPLSAAADDRSFLLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYFYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPLGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSVRQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDMSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIVLSMVKEITEYFHGNLAKEEARPLRIFMVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYGSSDDDSSSSSS 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2650590 2654821 - CaPI482276_11g001000.1 Cam11g0100 139022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0100 945 SUPERFAMILY Formin homology 2 domain (FH2 domain) 419 903 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 410 432 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 54 82 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 260 274 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 83 102 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 365 396 - -
Cam11g0100 945 Coils Coil 652 672 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 54 102 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 316 347 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 214 295 - -
Cam11g0100 945 MobiDBLite consensus disorder prediction 414 432 - -
Cam11g0100 945 Gene3D Formin, FH2 domain 481 900 IPR042201 -
Cam11g0100 945 ProSiteProfiles Formin homology-2 (FH2) domain profile. 482 916 IPR015425 -
Cam11g0100 945 SMART it6_source 482 905 IPR015425 -
Cam11g0100 945 Pfam Formin Homology 2 Domain 485 890 IPR015425 -
Cam11g0100 945 PANTHER FORMIN-RELATED 37 939 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cam11g0100 945 MobiDBLite consensus disorder prediction 373 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0100 K28090 - - csv:101213912 1377.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1721 Cam-Chr3:32315807 Cam11g0100 Cam-Chr11:2650590 1.40E-105 dispersed
Cam07g0241 Cam-Chr7:3554759 Cam11g0100 Cam-Chr11:2650590 3.70E-166 dispersed
Cam08g1338 Cam-Chr8:19672760 Cam11g0100 Cam-Chr11:2650590 3.80E-71 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam07g0241 . 180 1054 FH2 protein (formin) Gene Family AT3G25500 51.8 1.1e-191 667.5
Cam11g0100 . 451 927 FH2 protein (formin) Gene Family AT3G25500 66.9 1.6e-166 583.9
Cam02g1267 . 442 898 FH2 protein (formin) Gene Family AT3G25500 60.1 8.1e-142 501.9
Cam03g1721 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Cam07g0241 . 617 1071 FH2 protein (formin) Gene Family AT2G43800 60.3 5.3e-142 502.3
Cam02g1267 . 476 914 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Cam02g0859 . 279 591 FH2 protein (formin) Gene Family AT4G15200 52.1 3.2e-50 196.4
Cam05g1653 . 552 698 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cam05g1653 . 553 989 FH2 protein (formin) Gene Family AT5G54650 69.2 3.3e-168 589.3
Cam02g0859 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 4.1e-158 555.8
Cam07g0241 . 628 1029 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cam02g1267 . 31 917 FH2 protein (formin) Gene Family AT5G67470 58.2 9.8e-237 817.0
Cam07g0241 . 609 1071 FH2 protein (formin) Gene Family AT5G67470 58.9 9.7e-136 481.5
Cam11g0100 . 464 909 FH2 protein (formin) Gene Family AT5G67470 60.6 8.5e-132 468.4
Cam03g1721 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Cam05g2691 . 348 832 FH2 protein (formin) Gene Family AT1G59910 52.6 2.5e-126 450.3
Cam07g0241 . 649 1030 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cam02g1267 . 500 875 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cam02g1267 . 480 874 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cam05g1653 . 558 972 FH2 protein (formin) Gene Family AT3G05470 50.6 4.6e-106 382.9
Cam07g0233 . 962 1273 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cam07g0233 . 1 1277 FH2 protein (formin) Gene Family AT1G31810 67.9 0.0e+00 1225.3
Cam06g1369 . 1 1244 FH2 protein (formin) Gene Family AT1G31810 50.6 6.9e-241 831.2
Cam06g1735 . 1401 1722 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cam04g1237 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Cam05g1798 . 1088 1410 FH2 protein (formin) Gene Family AT5G07650 65.0 3.6e-110 396.4
Cam06g1369 . 934 1244 FH2 protein (formin) Gene Family AT5G07650 63.3 6.8e-109 392.1
Cam07g0233 . 946 1277 FH2 protein (formin) Gene Family AT5G07650 59.6 4.4e-108 389.4
Cam06g1735 . 1328 1715 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cam04g1237 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Cam05g1798 . 1012 1402 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cam06g1369 . 857 1245 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Cam07g0233 . 882 1271 FH2 protein (formin) Gene Family AT5G07770 55.2 3.6e-115 412.5
Cam05g1798 . 1004 1410 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT3G32400 69.8 6.8e-147 517.7
Cam06g1735 . 1328 1722 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Cam07g0233 . 882 1276 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cam04g1237 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Cam05g1798 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.5 0.0e+00 1155.6
Cam06g1369 . 1 1245 FH2 protein (formin) Gene Family AT2G25050 51.6 4.4e-290 994.6
Cam06g1735 . 1329 1722 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cam04g1237 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Cam05g1798 . 1013 1403 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cam07g0233 . 883 1272 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT5G07780 54.1 2.4e-101 366.3
Cam06g1735 . 1 1731 FH2 protein (formin) Gene Family AT5G07740 59.3 0.0e+00 1119.8
Cam06g1735 . 1400 1729 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Cam04g1237 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Cam06g1369 . 933 1245 FH2 protein (formin) Gene Family AT5G07760 65.3 1.2e-109 394.8
Cam05g1798 . 1087 1419 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cam07g0233 . 956 1277 FH2 protein (formin) Gene Family AT5G07760 60.1 5.0e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28