Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0143 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTTATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTCACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACTCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTACCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCAGCAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAGCAGCAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGTTACAGCAGCAGCACGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAGCTTAACAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATTAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTTAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCAAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGTATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTGGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCATCATTCAATCGATAA 3312 45.29 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQQQQLQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3109179 3119846 + CaPI482276_11g001430.1 Cam11g0143 139065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0143 1103 SUPERFAMILY CAD & PB1 domains 989 1054 - -
Cam11g0143 1103 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Cam11g0143 1103 Gene3D - 289 360 - -
Cam11g0143 1103 Gene3D - 124 227 IPR015300 -
Cam11g0143 1103 MobiDBLite consensus disorder prediction 583 627 - -
Cam11g0143 1103 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cam11g0143 1103 ProSiteProfiles PB1 domain profile. 976 1069 IPR053793 -
Cam11g0143 1103 MobiDBLite consensus disorder prediction 1084 1103 - -
Cam11g0143 1103 MobiDBLite consensus disorder prediction 695 729 - -
Cam11g0143 1103 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g0143 1103 Gene3D - 971 1065 - -
Cam11g0143 1103 FunFam Auxin response factor 124 228 - -
Cam11g0143 1103 Pfam AUX/IAA family 1022 1063 IPR033389 -
Cam11g0143 1103 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cam11g0143 1103 FunFam Auxin response factor 971 1065 - -
Cam11g0143 1103 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Cam11g0143 1103 FunFam Auxin response factor 289 361 - -
Cam11g0143 1103 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1067 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam11g0143 1103 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0796 Cam-Chr3:9050713 Cam11g0143 Cam-Chr11:3109179 1.10E-168 dispersed
Cam04g0816 Cam-Chr4:22439109 Cam11g0143 Cam-Chr11:3109179 1.40E-76 dispersed
Cam05g2024 Cam-Chr5:28967162 Cam11g0143 Cam-Chr11:3109179 1.10E-172 dispersed
Cam08g1540 Cam-Chr8:21634746 Cam11g0143 Cam-Chr11:3109179 4.50E-62 dispersed
Cam09g0937 Cam-Chr9:9621923 Cam11g0143 Cam-Chr11:3109179 4.10E-17 dispersed
Cam11g0143 Cam-Chr11:3109179 Cam11g1167 Cam-Chr11:22822635 1.00E-243 dispersed
Cam11g0143 Cam-Chr11:3109179 Cam01g2547 Cam-Chr1:37060138 3.20E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52849 PF02309 AUX_IAA 1.60E-09 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0143 K14486 - csv:101210917 1745.33