Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0145 ATGGGCGCTTTTGGAATTGTGTTCTTCTTCCTCCTCCTTGTCGCTGTGTTTCCTTTGTCTTCTCCTTTGTCCGAGAACGAAGCTCTTTTGAAACTCAAACAATCCTTCACCCATTCCGAATCCTTGAATTCTTGGAACTCTGACTCTGTCCCTTGCTCCGCTCGATGGACCGGCATTATCTGTAATAGAGGCGTTATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGAAAAATCGACGTCGAAGCTCTTCTTCAGCTTCGTAGCCTTCGAACCATTAGCTTCGTTAACAACAAATTCTCCGGTCCGATTCCGGAATTCAACAAAATCGGAGTTCTAAAATCTCTTCTCTTAACCGGAAACCACTTCTCCGGCGCTATCCCAAACGATTTCTTCTCTTCCTTAACTTCTTTAAAAAAGGTTTGGCTCTCTTCAAACAATTTCTCCGGTAACATTCCAAATTCTCTAGCTCAACTCTCCCATTTAATCGAACTCCATCTCGAGAGCAACCAATTTTCAGGACCAATCCCAAATCTCAAATACGCTTCAATTATAACATCCCTTGATCTCTCCAACAACAAACTCGAAGGTCAAATTCCCGAAACCCTTTCAAAATTCGACGCAAAAGCATTCGCTGGAAATGAAGGCCTTTGCGGAAACCCACTCCCGAAATCTTGCGGCGAAAACGCTGGACGAATTTCTGAAGAGAAACCCCTTTCTTCATCTTCACCTCCTGGGGAATCGCAAGGCAATGTTTCGAAATTGGTTGTGGCTTCATTGATAGCCGTGGTTGTATTTCTAATGGTGTTTATATTTTTGAGTGCTTCAAAGCGCAGAGAAGATGAGTTCAGTGTATTGGGGAGAGAACAAATGGAGGAAGTTGTGGAGGTTCATGTACCGAGTTCCGGCGGCGGCCATGATAAGCAATCCAGCAGAAGGGGTGGGGATTCTAAGAGAGGATCGCAACAGGGGAAGGCGGGGATGAGCGATCTTGTGGTGGTTAATGAAGATAAAGGGAAGTTTGGTTTGGCGGATTTGATGAAGGCTGCGGCGGAGGTTTTAGGGAATGGTGGGTTGGGTTCGGCTTACAAGGCGGTTATGTCCAATGGGTTGTCGGTGGTGGTGAAGAGAATGAGAGAGATGAATAAATTAGGGAAAGATGGGTTCGATGCGGAGATGAGACGACTTGGAAGATTGCGCCATCAGAATATATTAACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAATTGCTTGTGTCCGAGTACATTCCAAAGGGTAGCCTCTTGTATGTGTTGCATGGTGATCGTGGAGCCTGCCATGCAGATCTCAATTGGGCCACTCGGTTAAGGATCGTGCAAGGGATTGCAAGGGGATTGGGATTCCTCCATTCAGAATTTGCAACGTATGATCTGCCGCATGGGAATCTGAAATCCAGCAACGTTCTTCTAAGCGACAACTATGAGCCACTTTTGAGCGACTACGCATTCCATCCCCTTATCAATCCCAACAATGCAACTCAGGCAATGTTCGCTTACAAATCCCCTGAGTACGGGCAATACCAGGAAGTCTCTCCCAAGTCTGATGTTTATTGTCTTGGCATTATCATTCTCGAAATCATGACTAGTAAATTTCCTTCTCAATATCTTACAAATGGCAAGGGTGGTACTGATGTGGTGCAGTGGGTCTCATCTGCAATTTCTGAGAAGAGGGAGGCTGAACTCATTGACCCTGAGATTGCAAACGACACCGGTGCACTCAATCACATGGTCCAGCTTCTCATAATCGGCGCGGATTGCACCCACAATAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 1869 46.23 MGAFGIVFFFLLLVAVFPLSSPLSENEALLKLKQSFTHSESLNSWNSDSVPCSARWTGIICNRGVITGLHLSGLQLSGKIDVEALLQLRSLRTISFVNNKFSGPIPEFNKIGVLKSLLLTGNHFSGAIPNDFFSSLTSLKKVWLSSNNFSGNIPNSLAQLSHLIELHLESNQFSGPIPNLKYASIITSLDLSNNKLEGQIPETLSKFDAKAFAGNEGLCGNPLPKSCGENAGRISEEKPLSSSSPPGESQGNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREQMEEVVEVHVPSSGGGHDKQSSRRGGDSKRGSQQGKAGMSDLVVVNEDKGKFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGRLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHADLNWATRLRIVQGIARGLGFLHSEFATYDLPHGNLKSSNVLLSDNYEPLLSDYAFHPLINPNNATQAMFAYKSPEYGQYQEVSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAISEKREAELIDPEIANDTGALNHMVQLLIIGADCTHNNPQQRPEMREAIRRIEEI 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3132149 3134496 + CaPI482276_11g001450.1 Cam11g0145 139067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0145 622 FunFam Nuclear pore complex protein NUP107 23 179 - -
Cam11g0145 622 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cam11g0145 622 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515(InterPro)
Cam11g0145 622 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Cam11g0145 622 SUPERFAMILY Protein kinase-like (PK-like) 353 618 IPR011009 -
Cam11g0145 622 Gene3D Phosphorylase Kinase; domain 1 316 424 - -
Cam11g0145 622 Gene3D Transferase(Phosphotransferase) domain 1 425 622 - -
Cam11g0145 622 SUPERFAMILY L domain-like 23 206 - -
Cam11g0145 622 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Cam11g0145 622 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0145 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 622 IPR046959 -
Cam11g0145 622 Pfam Protein kinase domain 353 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0145 622 MobiDBLite consensus disorder prediction 230 249 - -
Cam11g0145 622 Gene3D Ribonuclease Inhibitor 183 225 IPR032675 -
Cam11g0145 622 MobiDBLite consensus disorder prediction 298 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1711 Cam-Chr8:23412512 Cam11g0145 Cam-Chr11:3132149 3.80E-100 dispersed
Cam10g1909 Cam-Chr10:33160136 Cam11g0145 Cam-Chr11:3132149 1.70E-71 dispersed
Cam11g0145 Cam-Chr11:3132149 Cam11g0283 Cam-Chr11:4305745 4.60E-68 dispersed
Cam11g0145 Cam-Chr11:3132149 Cam06g1551 Cam-Chr6:26985650 1.50E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85543 PF00069 Pkinase 4.80E-26 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0145 K28077 - csv:101215919 1071.23