Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0164 ATGCCGGTGCATCTCACACCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATCGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCGAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACATGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTCTCTTTTAGACCTATCAGTGATATTGAGAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTATTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTGTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGACGATGTCAAGTTTGGTGAAATAATAAGCAGCAAAATTTTCGATCAATTTCTTTTTAGGCTCAAAATTAAGGAGGAGACATATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGGTTAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCTAAATTTTCGAGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGTGA 1905 41.94 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATRSGNLEQPANGNGHLSARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYMISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISDIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIISSKIFDQFLFRLKIKEETYGDEQRVKNTVVKADKVNYSSESKYMLDLLSKFSRLNAVEDFEHIKK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3237237 3241422 + CaPI482276_11g001640.1 Cam11g0164 139086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0164 634 Gene3D - 176 286 IPR012340 -
Cam11g0164 634 PANTHER REPLICATION FACTOR A 1, RFA1 178 599 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cam11g0164 634 NCBIfam replication factor-a protein 1 (rpa1) 4 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam11g0164 634 SUPERFAMILY Nucleic acid-binding proteins 294 425 IPR012340 -
Cam11g0164 634 Pfam Replication factor-A C terminal domain 462 613 IPR013955 -
Cam11g0164 634 SUPERFAMILY Nucleic acid-binding proteins 176 290 IPR012340 -
Cam11g0164 634 SUPERFAMILY Nucleic acid-binding proteins 443 620 IPR012340 -
Cam11g0164 634 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cam11g0164 634 FunFam Replication protein A subunit 289 427 - -
Cam11g0164 634 Pfam OB-fold nucleic acid binding domain 192 262 IPR004365 GO:0003676(InterPro)
Cam11g0164 634 CDD RPA1_DBD_C 446 619 IPR047192 -
Cam11g0164 634 FunFam Replication protein A subunit 176 285 - -
Cam11g0164 634 Pfam Replication protein A OB domain 300 404 IPR031657 -
Cam11g0164 634 Gene3D - 3 111 IPR012340 -
Cam11g0164 634 FunFam Replication protein A subunit 4 111 - -
Cam11g0164 634 FunFam Replication protein A subunit 428 620 - -
Cam11g0164 634 Gene3D - 289 429 IPR012340 -
Cam11g0164 634 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cam11g0164 634 CDD RPA1_DBD_B 311 418 - -
Cam11g0164 634 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cam11g0164 634 Gene3D - 430 621 IPR012340 -
Cam11g0164 634 CDD RPA1_DBD_A 179 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0164 K07466 - - csv:101207583 1193.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1696 Cam-Chr6:28355730 Cam11g0164 Cam-Chr11:3237237 1.90E-85 dispersed
Cam10g0103 Cam-Chr10:2603082 Cam11g0164 Cam-Chr11:3237237 4.50E-199 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g104 . Blo16g00969 . Bda11g01026 . . . . . . . . . . . . . . . . . . . . Cla11g00142 Cam11g0164 Cec11g0165 Cco11g0176 Clacu11g0299 Cmu11g0152 Cre11g0650 . . . . . Csa02g00027 Chy05g01462 . . . . . . Bpe13g01237 . Bma06g00893 Sed04g0901 . . . . . . . . Bhi06g01596 Tan08g0026 Cmetu06g1804 . Hepe08g2687 . . . . . . . . . Lsi11g00167 . . Cme05g02064
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0007 . 105 657 Core DNA Replication Machinery Family AT4G14700 66.7 1.4e-213 740.0
Cam08g0007 . 105 667 Core DNA Replication Machinery Family AT4G12620 66.7 1.2e-220 763.5
Cam08g2047 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.4 6.0e-142 500.7
Cam07g0479 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 6.6e-151 530.8
Cam06g0369 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cam11g0931 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 8.0e-92 334.0
Cam09g2299 . 68 864 Core DNA Replication Machinery Family AT1G79150 59.6 6.7e-248 854.0
Cam10g1373 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1353.6
Cam01g2506 . 62 636 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cam02g0506 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cam11g0371 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.3 0.0e+00 1113.2
Cam01g2656 . 7 800 Core DNA Replication Machinery Family AT5G44635 73.4 0.0e+00 1163.3
Cam09g0512 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cam02g2032 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.1 1.5e-157 553.1
Cam02g2032 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.6 4.3e-143 505.0
Cam09g0867 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cam10g2023 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1081.2
Cam09g1617 . 1 424 Core DNA Replication Machinery Family AT2G14050 80.8 9.9e-199 690.3
Cam02g1242 . 1929 2339 Core DNA Replication Machinery Family AT2G20980 56.4 1.4e-118 423.3
Cam11g1620 . 7 960 Core DNA Replication Machinery Family AT1G77320 50.3 9.5e-257 883.6
Cam09g0265 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT1G19080 69.0 2.7e-64 241.9
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT3G55490 69.0 2.7e-64 241.9
Cam05g0170 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 1.7e-50 196.1
Cam02g1288 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1752.3
Cam04g1197 . 166 783 Core DNA Replication Machinery Family AT1G67630 59.6 2.3e-205 712.2
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam08g0150 . 136 579 Core DNA Replication Machinery Family AT5G41880 65.0 9.7e-177 616.7
Cam01g1553 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cam10g1715 . 1 419 Core DNA Replication Machinery Family AT2G42120 76.1 6.3e-197 683.7
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam01g0555 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 7.1e-37 150.2
Cam02g2276 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2982.6
Cam09g2092 . 68 2104 Core DNA Replication Machinery Family AT1G08260 68.0 0.0e+00 2787.7
Cam02g2276 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2948.3
Cam09g2092 . 90 2215 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2758.8
Cam04g1308 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 7.5e-122 434.5
Cam04g1307 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.6 4.5e-58 222.6
Cam02g2330 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.2 1.6e-306 1048.9
Cam10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cam04g0473 . 88 441 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cam11g1618 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cam08g1021 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.5e-154 542.7
Cam11g0164 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.6 9.7e-252 866.3
Cam10g0103 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Cam06g1696 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 5.7e-249 857.1
Cam10g0103 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 2.3e-227 785.8
Cam06g1696 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 2.7e-241 831.6
Cam10g0103 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.3 3.7e-224 775.0
Cam03g1804 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Cam05g0314 . 30 608 Core DNA Replication Machinery Family AT1G08840 62.1 3.7e-203 705.7
Cam07g1587 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 5.0e-115 411.0
Cam02g2230 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 1.1e-297 1019.2
Cam02g2230 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.5e-242 835.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32