Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam11g0164 | ATGCCGGTGCATCTCACACCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATCGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCGAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACATGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTCTCTTTTAGACCTATCAGTGATATTGAGAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTATTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTGTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGACGATGTCAAGTTTGGTGAAATAATAAGCAGCAAAATTTTCGATCAATTTCTTTTTAGGCTCAAAATTAAGGAGGAGACATATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGGTTAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCTAAATTTTCGAGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGTGA | 1905 | 41.94 | MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATRSGNLEQPANGNGHLSARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYMISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISDIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIISSKIFDQFLFRLKIKEETYGDEQRVKNTVVKADKVNYSSESKYMLDLLSKFSRLNAVEDFEHIKK | 634 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3237237 | 3241422 | + | CaPI482276_11g001640.1 | Cam11g0164 | 139086 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam11g0164 | 634 | Gene3D | - | 176 | 286 | IPR012340 | - | |
| Cam11g0164 | 634 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 178 | 599 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Cam11g0164 | 634 | NCBIfam | replication factor-a protein 1 (rpa1) | 4 | 619 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cam11g0164 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 294 | 425 | IPR012340 | - | |
| Cam11g0164 | 634 | Pfam | Replication factor-A C terminal domain | 462 | 613 | IPR013955 | - | |
| Cam11g0164 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 176 | 290 | IPR012340 | - | |
| Cam11g0164 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 443 | 620 | IPR012340 | - | |
| Cam11g0164 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 106 | IPR012340 | - | |
| Cam11g0164 | 634 | FunFam | Replication protein A subunit | 289 | 427 | - | - | |
| Cam11g0164 | 634 | Pfam | OB-fold nucleic acid binding domain | 192 | 262 | IPR004365 | GO:0003676(InterPro) | |
| Cam11g0164 | 634 | CDD | RPA1_DBD_C | 446 | 619 | IPR047192 | - | |
| Cam11g0164 | 634 | FunFam | Replication protein A subunit | 176 | 285 | - | - | |
| Cam11g0164 | 634 | Pfam | Replication protein A OB domain | 300 | 404 | IPR031657 | - | |
| Cam11g0164 | 634 | Gene3D | - | 3 | 111 | IPR012340 | - | |
| Cam11g0164 | 634 | FunFam | Replication protein A subunit | 4 | 111 | - | - | |
| Cam11g0164 | 634 | FunFam | Replication protein A subunit | 428 | 620 | - | - | |
| Cam11g0164 | 634 | Gene3D | - | 289 | 429 | IPR012340 | - | |
| Cam11g0164 | 634 | CDD | RPA1N | 9 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cam11g0164 | 634 | CDD | RPA1_DBD_B | 311 | 418 | - | - | |
| Cam11g0164 | 634 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 97 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cam11g0164 | 634 | Gene3D | - | 430 | 621 | IPR012340 | - | |
| Cam11g0164 | 634 | CDD | RPA1_DBD_A | 179 | 281 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam06g1696 | Cam-Chr6:28355730 | Cam11g0164 | Cam-Chr11:3237237 | 1.90E-85 | dispersed | |
| Cam10g0103 | Cam-Chr10:2603082 | Cam11g0164 | Cam-Chr11:3237237 | 4.50E-199 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam11g0164 | K07466 | - | csv:101207583 | 1193.72 |