Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0168 ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTCGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 756 47.22 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3264846 3267319 + CaPI482276_11g001680.1 Cam11g0168 139090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0168 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cam11g0168 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cam11g0168 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cam11g0168 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cam11g0168 251 Pfam PHD-finger 198 244 IPR019787 -
Cam11g0168 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cam11g0168 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cam11g0168 251 FunFam PHD finger alfin-like protein 190 246 - -
Cam11g0168 251 SMART PHD_3 197 245 IPR001965 -
Cam11g0168 251 MobiDBLite consensus disorder prediction 145 191 - -
Cam11g0168 251 MobiDBLite consensus disorder prediction 145 164 - -
Cam11g0168 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0425 Cam-Chr7:5746385 Cam11g0168 Cam-Chr11:3264846 1.00E-47 dispersed
Cam10g2172 Cam-Chr10:35194335 Cam11g0168 Cam-Chr11:3264846 2.70E-85 dispersed
Cam08g1443 Cam-Chr8:20765589 Cam11g0168 Cam-Chr11:3264846 1.80E-108 transposed
Cam10g0706 Cam-Chr10:11447040 Cam11g0168 Cam-Chr11:3264846 4.00E-99 transposed
Cam11g0168 Cam-Chr11:3264846 Cam03g1545 Cam-Chr3:30391170 9.00E-23 wgd
Cam11g0168 Cam-Chr11:3264846 Cam09g0081 Cam-Chr9:1672909 3.30E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52852 PF12165 Alfin 9.00E-70 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0168 K26274 - rcu:8272513 460.685