Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0168 | ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTCGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA | 756 | 47.22 | MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3264846 | 3267319 | + | CaPI482276_11g001680.1 | Cam11g0168 | 139090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0168 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 248 | IPR011011 | - | |
Cam11g0168 | 251 | PANTHER | CPG BINDING PROTEIN | 7 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cam11g0168 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
Cam11g0168 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Cam11g0168 | 251 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Cam11g0168 | 251 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cam11g0168 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
Cam11g0168 | 251 | FunFam | PHD finger alfin-like protein | 190 | 246 | - | - | |
Cam11g0168 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Cam11g0168 | 251 | MobiDBLite | consensus disorder prediction | 145 | 191 | - | - | |
Cam11g0168 | 251 | MobiDBLite | consensus disorder prediction | 145 | 164 | - | - | |
Cam11g0168 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam07g0425 | Cam-Chr7:5746385 | Cam11g0168 | Cam-Chr11:3264846 | 1.00E-47 | dispersed | |
Cam10g2172 | Cam-Chr10:35194335 | Cam11g0168 | Cam-Chr11:3264846 | 2.70E-85 | dispersed | |
Cam08g1443 | Cam-Chr8:20765589 | Cam11g0168 | Cam-Chr11:3264846 | 1.80E-108 | transposed | |
Cam10g0706 | Cam-Chr10:11447040 | Cam11g0168 | Cam-Chr11:3264846 | 4.00E-99 | transposed | |
Cam11g0168 | Cam-Chr11:3264846 | Cam03g1545 | Cam-Chr3:30391170 | 9.00E-23 | wgd | |
Cam11g0168 | Cam-Chr11:3264846 | Cam09g0081 | Cam-Chr9:1672909 | 3.30E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52852 | PF12165 | Alfin | 9.00E-70 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0168 | K26274 | - | rcu:8272513 | 460.685 |