Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0173 ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTATTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTCGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGTGAACTTCTGGTACATCCTTTCATCAAAAAGTTCGAACACTTGGACGTAGATCTCGCAGCTTACTTCAAGGATGCTGGCTCTCCATTAGCAACCTTCTAA 1062 42.0 MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLAQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFEHLDVDLAAYFKDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3309926 3312203 + CaPI482276_11g001730.1 Cam11g0173 139095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0173 353 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0173 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0173 353 FunFam Mitogen-activated protein kinase kinase 6 151 348 - -
Cam11g0173 353 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Cam11g0173 353 SUPERFAMILY Protein kinase-like (PK-like) 55 335 IPR011009 -
Cam11g0173 353 FunFam Mitogen-activated protein kinase kinase 1 52 149 - -
Cam11g0173 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0173 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Cam11g0173 353 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0173 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cam11g0173 353 CDD PKc_MAPKK_plant_like 68 333 - -
Cam11g0173 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1708 Cam-Chr2:30149890 Cam11g0173 Cam-Chr11:3309926 1.30E-30 dispersed
Cam09g0714 Cam-Chr9:7145859 Cam11g0173 Cam-Chr11:3309926 2.60E-31 dispersed
Cam11g0173 Cam-Chr11:3309926 Cam11g0213 Cam-Chr11:3662268 1.20E-116 dispersed
Cam04g1070 Cam-Chr4:24856635 Cam11g0173 Cam-Chr11:3309926 1.80E-63 transposed
Cam11g0173 Cam-Chr11:3309926 Cam03g1552 Cam-Chr3:30458160 1.00E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85545 PF00069 Pkinase 9.10E-70 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0173 K20603 - csv:101206374 676.781