Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0173 | ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTATTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTCGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGTGAACTTCTGGTACATCCTTTCATCAAAAAGTTCGAACACTTGGACGTAGATCTCGCAGCTTACTTCAAGGATGCTGGCTCTCCATTAGCAACCTTCTAA | 1062 | 42.0 | MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLAQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFEHLDVDLAAYFKDAGSPLATF | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3309926 | 3312203 | + | CaPI482276_11g001730.1 | Cam11g0173 | 139095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0173 | 353 | SMART | serkin_6 | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0173 | 353 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam11g0173 | 353 | FunFam | Mitogen-activated protein kinase kinase 6 | 151 | 348 | - | - | |
Cam11g0173 | 353 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 149 | - | - | |
Cam11g0173 | 353 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 335 | IPR011009 | - | |
Cam11g0173 | 353 | FunFam | Mitogen-activated protein kinase kinase 1 | 52 | 149 | - | - | |
Cam11g0173 | 353 | ProSiteProfiles | Protein kinase domain profile. | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0173 | 353 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 348 | - | - | |
Cam11g0173 | 353 | Pfam | Protein kinase domain | 73 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0173 | 353 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Cam11g0173 | 353 | CDD | PKc_MAPKK_plant_like | 68 | 333 | - | - | |
Cam11g0173 | 353 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 46 | 349 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1708 | Cam-Chr2:30149890 | Cam11g0173 | Cam-Chr11:3309926 | 1.30E-30 | dispersed | |
Cam09g0714 | Cam-Chr9:7145859 | Cam11g0173 | Cam-Chr11:3309926 | 2.60E-31 | dispersed | |
Cam11g0173 | Cam-Chr11:3309926 | Cam11g0213 | Cam-Chr11:3662268 | 1.20E-116 | dispersed | |
Cam04g1070 | Cam-Chr4:24856635 | Cam11g0173 | Cam-Chr11:3309926 | 1.80E-63 | transposed | |
Cam11g0173 | Cam-Chr11:3309926 | Cam03g1552 | Cam-Chr3:30458160 | 1.00E-149 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85545 | PF00069 | Pkinase | 9.10E-70 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0173 | K20603 | - | csv:101206374 | 676.781 |