Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0174 ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACCGCTAGTACTACTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCAACAAATTTCTTCGACGAAGTTAATGTGATTGGCATGGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGATGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCAGCGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACCGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTGGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACATATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2190 43.38 MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTAPSSFDIYVIYKRRVITRTASTTPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGMGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIISDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDISPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3313877 3317308 - CaPI482276_11g001740.1 Cam11g0174 139096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0174 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0174 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0174 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam11g0174 729 PANTHER OS02G0152300 PROTEIN 4 717 IPR051348 -
Cam11g0174 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cam11g0174 729 SUPERFAMILY RING/U-box 646 723 - -
Cam11g0174 729 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Cam11g0174 729 Coils Coil 259 279 - -
Cam11g0174 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam11g0174 729 Gene3D HUPs 2 156 IPR014729 -
Cam11g0174 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Cam11g0174 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 153 - -
Cam11g0174 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0174 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Cam11g0174 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Cam11g0174 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam11g0174 729 Coils Coil 298 344 - -
Cam11g0174 729 Pfam Protein kinase domain 374 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0174 729 MobiDBLite consensus disorder prediction 201 220 - -
Cam11g0174 729 FunFam Os07g0541700 protein 445 535 - -
Cam11g0174 729 Pfam Universal stress protein family 18 153 IPR006016 -
Cam11g0174 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Cam11g0174 729 CDD STK_N 3 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0179 Cam-Chr5:1902846 Cam11g0174 Cam-Chr11:3313877 1.60E-91 dispersed
Cam06g1882 Cam-Chr6:29871359 Cam11g0174 Cam-Chr11:3313877 2.80E-08 dispersed
Cam11g0174 Cam-Chr11:3313877 Cam11g1152 Cam-Chr11:22609819 5.70E-102 dispersed
Cam01g0472 Cam-Chr1:5045333 Cam11g0174 Cam-Chr11:3313877 1.10E-128 transposed
Cam11g0174 Cam-Chr11:3313877 Cam09g0077 Cam-Chr9:1597981 2.90E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85546 PF00069 Pkinase 9.40E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0174 - - - 0.0