Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0200 | ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCGGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA | 1179 | 52.16 | MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3522594 | 3523772 | - | CaPI482276_11g002000.1 | Cam11g0200 | 139122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0200 | 392 | Gene3D | - | 103 | 165 | - | - | |
Cam11g0200 | 392 | SUPERFAMILY | CCCH zinc finger | 138 | 168 | IPR036855 | GO:0046872(InterPro) | |
Cam11g0200 | 392 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872(InterPro) | |
Cam11g0200 | 392 | FunFam | Zinc finger CCCH domain-containing protein 66 | 97 | 165 | - | - | |
Cam11g0200 | 392 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872(InterPro) | |
Cam11g0200 | 392 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872(InterPro) | |
Cam11g0200 | 392 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - | |
Cam11g0200 | 392 | PANTHER | UNKEMPT FAMILY MEMBER | 55 | 392 | IPR045234 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g1935 | Cam-Chr5:28293110 | Cam11g0200 | Cam-Chr11:3522594 | 1.00E-85 | dispersed | |
Cam07g0249 | Cam-Chr7:3611851 | Cam11g0200 | Cam-Chr11:3522594 | 3.80E-57 | dispersed | |
Cam08g2154 | Cam-Chr8:26966745 | Cam11g0200 | Cam-Chr11:3522594 | 2.20E-63 | dispersed | |
Cam10g1676 | Cam-Chr10:30768265 | Cam11g0200 | Cam-Chr11:3522594 | 1.40E-50 | dispersed | |
Cam07g1718 | Cam-Chr7:31919231 | Cam11g0200 | Cam-Chr11:3522594 | 5.00E-46 | transposed | |
Cam11g0200 | Cam-Chr11:3522594 | Cam03g1606 | Cam-Chr3:31060957 | 9.50E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52855 | None | None | None | None | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0200 | - | - | - | 0.0 |