Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0200 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCGGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA 1179 52.16 MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3522594 3523772 - CaPI482276_11g002000.1 Cam11g0200 139122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0200 392 Gene3D - 103 165 - -
Cam11g0200 392 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Cam11g0200 392 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Cam11g0200 392 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Cam11g0200 392 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Cam11g0200 392 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Cam11g0200 392 MobiDBLite consensus disorder prediction 237 256 - -
Cam11g0200 392 PANTHER UNKEMPT FAMILY MEMBER 55 392 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1935 Cam-Chr5:28293110 Cam11g0200 Cam-Chr11:3522594 1.00E-85 dispersed
Cam07g0249 Cam-Chr7:3611851 Cam11g0200 Cam-Chr11:3522594 3.80E-57 dispersed
Cam08g2154 Cam-Chr8:26966745 Cam11g0200 Cam-Chr11:3522594 2.20E-63 dispersed
Cam10g1676 Cam-Chr10:30768265 Cam11g0200 Cam-Chr11:3522594 1.40E-50 dispersed
Cam07g1718 Cam-Chr7:31919231 Cam11g0200 Cam-Chr11:3522594 5.00E-46 transposed
Cam11g0200 Cam-Chr11:3522594 Cam03g1606 Cam-Chr3:31060957 9.50E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52855 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0200 - - - 0.0