Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0212 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTCGAGAGGCTGGGCGATTACCTTGTCGATCAGGGTCTGTAG 402 49.75 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3658864 3660357 + CaPI482276_11g002120.1 Cam11g0212 139134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0212 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cam11g0212 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 FunFam Profilin 1 133 - -
Cam11g0212 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cam11g0212 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cam11g0212 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Cam11g0212 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Cam11g0212 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1227 Cam-Chr7:26611933 Cam11g0212 Cam-Chr11:3658864 1.90E-59 dispersed
Cam09g0024 Cam-Chr9:1200515 Cam11g0212 Cam-Chr11:3658864 8.80E-62 dispersed
Cam11g0212 Cam-Chr11:3658864 Cam11g1523 Cam-Chr11:28062703 2.10E-39 dispersed
Cam11g0212 Cam-Chr11:3658864 Cam11g0213 Cam-Chr11:3662268 1.10E-48 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0212 K05759 - csv:101219322 260.381