Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0213 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAGATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGGAAATTTTCTAGTACTACAATTTTTCATACTTCCTTTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTATTCGCTAGTGTATGGGCTTGTGTGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTTGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTTCTAGTTTTCTTCCATAG 1686 42.7 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAGNFLVLQFFILPLLLATKLVHYFLFASVWACVMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFSSFLP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3662268 3670715 + CaPI482276_11g002130.1 Cam11g0213 139135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0213 561 FunFam Mitogen-activated protein kinase kinase 6 227 336 - -
Cam11g0213 561 FunFam Profilin 1 130 - -
Cam11g0213 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 SUPERFAMILY Protein kinase-like (PK-like) 255 546 IPR011009 -
Cam11g0213 561 Gene3D Transferase(Phosphotransferase) domain 1 338 531 - -
Cam11g0213 561 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 Gene3D Dynein light chain 2a, cytoplasmic 2 126 - -
Cam11g0213 561 Pfam Profilin 1 113 IPR048278 GO:0003779(InterPro)
Cam11g0213 561 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam11g0213 561 ProSiteProfiles Protein kinase domain profile. 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 Pfam Protein kinase domain 258 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 Gene3D Phosphorylase Kinase; domain 1 226 336 - -
Cam11g0213 561 SUPERFAMILY Profilin (actin-binding protein) 2 123 IPR036140 -
Cam11g0213 561 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 208 533 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cam11g0213 561 SMART serkin_6 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 CDD PROF 2 112 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 CDD PKc_MAPKK_plant_like 255 521 - -
Cam11g0213 561 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524(InterPro)
Cam11g0213 561 FunFam Mitogen-activated protein kinase kinase 6 338 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1552 Cam-Chr3:30458160 Cam11g0213 Cam-Chr11:3662268 2.90E-128 dispersed
Cam07g1143 Cam-Chr7:25857310 Cam11g0213 Cam-Chr11:3662268 3.50E-55 dispersed
Cam10g1289 Cam-Chr10:26343442 Cam11g0213 Cam-Chr11:3662268 1.50E-65 dispersed
Cam11g0173 Cam-Chr11:3309926 Cam11g0213 Cam-Chr11:3662268 1.20E-116 dispersed
Cam11g0213 Cam-Chr11:3662268 Cam11g1523 Cam-Chr11:28062703 1.10E-39 dispersed
Cam11g0212 Cam-Chr11:3658864 Cam11g0213 Cam-Chr11:3662268 1.10E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85548 PF00069 Pkinase 5.40E-66 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0213 K04368 - csv:101218848 676.396