Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0213 | ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAGATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGGAAATTTTCTAGTACTACAATTTTTCATACTTCCTTTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTATTCGCTAGTGTATGGGCTTGTGTGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTTGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTTCTAGTTTTCTTCCATAG | 1686 | 42.7 | MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAGNFLVLQFFILPLLLATKLVHYFLFASVWACVMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFSSFLP | 561 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3662268 | 3670715 | + | CaPI482276_11g002130.1 | Cam11g0213 | 139135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0213 | 561 | FunFam | Mitogen-activated protein kinase kinase 6 | 227 | 336 | - | - | |
Cam11g0213 | 561 | FunFam | Profilin | 1 | 130 | - | - | |
Cam11g0213 | 561 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 375 | 387 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam11g0213 | 561 | SUPERFAMILY | Protein kinase-like (PK-like) | 255 | 546 | IPR011009 | - | |
Cam11g0213 | 561 | Gene3D | Transferase(Phosphotransferase) domain 1 | 338 | 531 | - | - | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 71 | 80 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 52 | 66 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 84 | 99 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Plant profilin signature | 104 | 117 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Profilin signature | 100 | 113 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Profilin signature | 40 | 60 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | PRINTS | Profilin signature | 64 | 78 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | Gene3D | Dynein light chain 2a, cytoplasmic | 2 | 126 | - | - | |
Cam11g0213 | 561 | Pfam | Profilin | 1 | 113 | IPR048278 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | ProSiteProfiles | Protein kinase domain profile. | 257 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0213 | 561 | Pfam | Protein kinase domain | 258 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0213 | 561 | Gene3D | Phosphorylase Kinase; domain 1 | 226 | 336 | - | - | |
Cam11g0213 | 561 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 123 | IPR036140 | - | |
Cam11g0213 | 561 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 208 | 533 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cam11g0213 | 561 | SMART | serkin_6 | 257 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam11g0213 | 561 | CDD | PROF | 2 | 112 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | CDD | PKc_MAPKK_plant_like | 255 | 521 | - | - | |
Cam11g0213 | 561 | SMART | prof_2 | 1 | 131 | IPR005455 | GO:0003779(InterPro) | |
Cam11g0213 | 561 | ProSitePatterns | Protein kinases ATP-binding region signature. | 263 | 286 | IPR017441 | GO:0005524(InterPro) | |
Cam11g0213 | 561 | FunFam | Mitogen-activated protein kinase kinase 6 | 338 | 536 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1552 | Cam-Chr3:30458160 | Cam11g0213 | Cam-Chr11:3662268 | 2.90E-128 | dispersed | |
Cam07g1143 | Cam-Chr7:25857310 | Cam11g0213 | Cam-Chr11:3662268 | 3.50E-55 | dispersed | |
Cam10g1289 | Cam-Chr10:26343442 | Cam11g0213 | Cam-Chr11:3662268 | 1.50E-65 | dispersed | |
Cam11g0173 | Cam-Chr11:3309926 | Cam11g0213 | Cam-Chr11:3662268 | 1.20E-116 | dispersed | |
Cam11g0213 | Cam-Chr11:3662268 | Cam11g1523 | Cam-Chr11:28062703 | 1.10E-39 | dispersed | |
Cam11g0212 | Cam-Chr11:3658864 | Cam11g0213 | Cam-Chr11:3662268 | 1.10E-48 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85548 | PF00069 | Pkinase | 5.40E-66 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0213 | K04368 | - | csv:101218848 | 676.396 |