Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0213 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAGATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGGAAATTTTCTAGTACTACAATTTTTCATACTTCCTTTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTATTCGCTAGTGTATGGGCTTGTGTGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTTGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTTCTAGTTTTCTTCCATAG 1686 42.7 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAGNFLVLQFFILPLLLATKLVHYFLFASVWACVMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFSSFLP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3662268 3670715 + CaPI482276_11g002130.1 Cam11g0213 139135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0213 561 FunFam Mitogen-activated protein kinase kinase 6 227 336 - -
Cam11g0213 561 FunFam Profilin 1 130 - -
Cam11g0213 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 SUPERFAMILY Protein kinase-like (PK-like) 255 546 IPR011009 -
Cam11g0213 561 Gene3D Transferase(Phosphotransferase) domain 1 338 531 - -
Cam11g0213 561 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 Gene3D Dynein light chain 2a, cytoplasmic 2 126 - -
Cam11g0213 561 Pfam Profilin 1 113 IPR048278 GO:0003779(InterPro)
Cam11g0213 561 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam11g0213 561 ProSiteProfiles Protein kinase domain profile. 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 Pfam Protein kinase domain 258 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 Gene3D Phosphorylase Kinase; domain 1 226 336 - -
Cam11g0213 561 SUPERFAMILY Profilin (actin-binding protein) 2 123 IPR036140 -
Cam11g0213 561 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 208 533 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cam11g0213 561 SMART serkin_6 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0213 561 CDD PROF 2 112 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 CDD PKc_MAPKK_plant_like 255 521 - -
Cam11g0213 561 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cam11g0213 561 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524(InterPro)
Cam11g0213 561 FunFam Mitogen-activated protein kinase kinase 6 338 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0213 K04368 - - csv:101218848 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1552 Cam-Chr3:30458160 Cam11g0213 Cam-Chr11:3662268 2.90E-128 dispersed
Cam07g1143 Cam-Chr7:25857310 Cam11g0213 Cam-Chr11:3662268 3.50E-55 dispersed
Cam10g1289 Cam-Chr10:26343442 Cam11g0213 Cam-Chr11:3662268 1.50E-65 dispersed
Cam11g0173 Cam-Chr11:3309926 Cam11g0213 Cam-Chr11:3662268 1.20E-116 dispersed
Cam11g0213 Cam-Chr11:3662268 Cam11g1523 Cam-Chr11:28062703 1.10E-39 dispersed
Cam11g0212 Cam-Chr11:3658864 Cam11g0213 Cam-Chr11:3662268 1.10E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.8e-215 742.7
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.7e-214 740.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.5e-210 726.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT2G19760 72.1 8.6e-49 189.9
Cam11g1523 . 1 98 Cytoskeleton Gene Families AT2G19760 73.5 8.1e-39 156.8
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT4G29350 72.1 9.5e-48 186.4
Cam11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cam11g0213 . 1 130 Cytoskeleton Gene Families AT4G29340 61.2 4.2e-43 171.0
Cam11g1523 . 1 97 Cytoskeleton Gene Families AT4G29340 72.0 7.0e-38 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85548 PF00069 Pkinase 5.40E-66 CL0016 Cam PK