Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0240 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.18 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3903400 3907103 + CaPI482276_11g002400.1 Cam11g0240 139162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0240 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cam11g0240 192 CDD HMG-box_SF 120 156 - -
Cam11g0240 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cam11g0240 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cam11g0240 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cam11g0240 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2260 Cam-Chr8:27700522 Cam11g0240 Cam-Chr11:3903400 8.80E-18 dispersed
Cam10g0296 Cam-Chr10:5098968 Cam11g0240 Cam-Chr11:3903400 8.20E-40 dispersed
Cam02g2328 Cam-Chr2:35847031 Cam11g0240 Cam-Chr11:3903400 1.10E-48 transposed
Cam05g2575 Cam-Chr5:33469589 Cam11g0240 Cam-Chr11:3903400 2.00E-31 transposed
Cam05g2558 Cam-Chr5:33354812 Cam11g0240 Cam-Chr11:3903400 1.30E-22 transposed
Cam11g0240 Cam-Chr11:3903400 Cam06g1215 Cam-Chr6:23391851 6.20E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52857 PF04690 YABBY 5.30E-71 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0240 K25796 - csv:101219877 387.882