Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0240 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.18 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3903400 | 3907103 | + | CaPI482276_11g002400.1 | Cam11g0240 | 139162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0240 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
Cam11g0240 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
Cam11g0240 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Cam11g0240 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
Cam11g0240 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - | |
Cam11g0240 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g2260 | Cam-Chr8:27700522 | Cam11g0240 | Cam-Chr11:3903400 | 8.80E-18 | dispersed | |
Cam10g0296 | Cam-Chr10:5098968 | Cam11g0240 | Cam-Chr11:3903400 | 8.20E-40 | dispersed | |
Cam02g2328 | Cam-Chr2:35847031 | Cam11g0240 | Cam-Chr11:3903400 | 1.10E-48 | transposed | |
Cam05g2575 | Cam-Chr5:33469589 | Cam11g0240 | Cam-Chr11:3903400 | 2.00E-31 | transposed | |
Cam05g2558 | Cam-Chr5:33354812 | Cam11g0240 | Cam-Chr11:3903400 | 1.30E-22 | transposed | |
Cam11g0240 | Cam-Chr11:3903400 | Cam06g1215 | Cam-Chr6:23391851 | 6.20E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52857 | PF04690 | YABBY | 5.30E-71 | CL0114 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0240 | K25796 | - | csv:101219877 | 387.882 |