Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0245 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGTAAAACCCGACAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCAGGAGCCGCATCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAGAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGAACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA 741 51.82 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELVKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3969586 3971057 + CaPI482276_11g002450.1 Cam11g0245 139167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0245 246 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 Coils Coil 199 219 - -
Cam11g0245 246 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cam11g0245 246 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 138 IPR050913 -
Cam11g0245 246 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0245 246 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1294 Cam-Chr7:27307607 Cam11g0245 Cam-Chr11:3969586 1.10E-44 dispersed
Cam08g1822 Cam-Chr8:24313592 Cam11g0245 Cam-Chr11:3969586 1.40E-25 dispersed
Cam09g0319 Cam-Chr9:3562201 Cam11g0245 Cam-Chr11:3969586 2.80E-24 dispersed
Cam11g0245 Cam-Chr11:3969586 Cam11g1563 Cam-Chr11:28432388 1.10E-17 dispersed
Cam11g0245 Cam-Chr11:3969586 Cam05g1854 Cam-Chr5:27494329 7.90E-56 wgd
Cam11g0245 Cam-Chr11:3969586 Cam06g1226 Cam-Chr6:23555178 6.30E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52858 PF00847 AP2 3.60E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0245 - - - 0.0