Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0245 | ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGTAAAACCCGACAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCAGGAGCCGCATCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAGAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGAACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA | 741 | 51.82 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELVKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3969586 | 3971057 | + | CaPI482276_11g002450.1 | Cam11g0245 | 139167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0245 | 246 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | Coils | Coil | 199 | 219 | - | - | |
Cam11g0245 | 246 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cam11g0245 | 246 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 138 | IPR050913 | - | |
Cam11g0245 | 246 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0245 | 246 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam07g1294 | Cam-Chr7:27307607 | Cam11g0245 | Cam-Chr11:3969586 | 1.10E-44 | dispersed | |
Cam08g1822 | Cam-Chr8:24313592 | Cam11g0245 | Cam-Chr11:3969586 | 1.40E-25 | dispersed | |
Cam09g0319 | Cam-Chr9:3562201 | Cam11g0245 | Cam-Chr11:3969586 | 2.80E-24 | dispersed | |
Cam11g0245 | Cam-Chr11:3969586 | Cam11g1563 | Cam-Chr11:28432388 | 1.10E-17 | dispersed | |
Cam11g0245 | Cam-Chr11:3969586 | Cam05g1854 | Cam-Chr5:27494329 | 7.90E-56 | wgd | |
Cam11g0245 | Cam-Chr11:3969586 | Cam06g1226 | Cam-Chr6:23555178 | 6.30E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52858 | PF00847 | AP2 | 3.60E-12 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0245 | - | - | - | 0.0 |