Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0309 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCGCCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGCCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACTCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCGTCGTCCTCCTCTTCTAATATTTCAACTGGACTTGTTGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGACCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGAGAACGAGAATTTCAGGCCGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTATATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACGAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAGGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTTGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGACCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTCGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCCGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACTCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGGCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA 2022 51.53 MSTPTPAPTSPPATNTTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRPPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSHTPSTPSRSPPPPSTSSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNAPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMTFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4618815 4622088 + CaPI482276_11g003090.1 Cam11g0309 139231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0309 673 MobiDBLite consensus disorder prediction 586 605 - -
Cam11g0309 673 MobiDBLite consensus disorder prediction 1 142 - -
Cam11g0309 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0309 673 PRINTS Proline rich extensin signature 49 74 - -
Cam11g0309 673 PRINTS Proline rich extensin signature 4 20 - -
Cam11g0309 673 PRINTS Proline rich extensin signature 24 41 - -
Cam11g0309 673 MobiDBLite consensus disorder prediction 187 278 - -
Cam11g0309 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 126 620 IPR047117 -
Cam11g0309 673 FunFam proline-rich receptor-like protein kinase PERK1 281 378 - -
Cam11g0309 673 MobiDBLite consensus disorder prediction 582 607 - -
Cam11g0309 673 SMART serkin_6 303 539 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0309 673 FunFam Proline-rich receptor-like protein kinase PERK1 379 587 - -
Cam11g0309 673 Pfam Protein tyrosine and serine/threonine kinase 308 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g0309 673 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g0309 673 MobiDBLite consensus disorder prediction 627 655 - -
Cam11g0309 673 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Cam11g0309 673 MobiDBLite consensus disorder prediction 222 252 - -
Cam11g0309 673 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Cam11g0309 673 MobiDBLite consensus disorder prediction 626 673 - -
Cam11g0309 673 Gene3D Phosphorylase Kinase; domain 1 281 378 - -
Cam11g0309 673 MobiDBLite consensus disorder prediction 1 155 - -
Cam11g0309 673 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2732 Cam-Chr5:34626069 Cam11g0309 Cam-Chr11:4618815 2.50E-132 dispersed
Cam07g0938 Cam-Chr7:23065294 Cam11g0309 Cam-Chr11:4618815 1.70E-155 dispersed
Cam07g1201 Cam-Chr7:26388516 Cam11g0309 Cam-Chr11:4618815 1.60E-86 dispersed
Cam07g1316 Cam-Chr7:27531992 Cam11g0309 Cam-Chr11:4618815 1.70E-78 dispersed
Cam11g0309 Cam-Chr11:4618815 Cam11g0470 Cam-Chr11:6176088 1.00E-161 dispersed
Cam11g1759 Cam-Chr11:30146808 Cam11g0309 Cam-Chr11:4618815 1.90E-71 dispersed
Cam01g1639 Cam-Chr1:29982192 Cam11g0309 Cam-Chr11:4618815 2.90E-65 transposed
Cam11g0309 Cam-Chr11:4618815 Cam06g0920 Cam-Chr6:13690277 6.70E-198 wgd
Cam11g0309 Cam-Chr11:4618815 Cam09g0228 Cam-Chr9:2919266 1.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85551 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0309 - - - 0.0