Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0315 ATGGGGGAAGAAGATTCCGTGGGTGCGCCTCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGTGCCTCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCGCAGAATCTTCCGCAAGCTCAGCCAAAGCCACAGACGCAGACGCAGATGGTGGCGGCGGCGATCGCACCTTTGGCTCCTCATTCGTCAGTAAGAGCTGTGAAACCGGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAGCAGTGTAACTGTAAACACTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATATTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCCAAAATTGCCAGCAGCCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGGTGCCACTGCAAGAAATCGGGTTGTCTAAAAAAGTATTGCGAGTGTTTCCAGGCCAACATTCTCTGTTCAGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAGGACATATCCACCCATAGACCAGTGGCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTCGGTAGCCCGTCGGTGTTGGGTCCTTCAAAGTTCACGTATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCTGATGGCCAGACTGAAACTTCTGTTGCATCATCCTCTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCTAGTGCAAACCAGGCTGATAAAACCACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCCGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGCTAATGGCTGCTGCTTCCCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCAATTACACCGTCAGTGAAGACATCGCAGACAGTGACAACCCCAGCAGTTATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1779 46.21 MGEEDSVGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQTQTQMVAAAIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPVAFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSSQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLNNKVTKSSITPSVKTSQTVTTPAVMTLSNDQRQKVLPLS 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4673378 4677385 - CaPI482276_11g003150.1 Cam11g0315 139237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0315 592 SMART CXC_2 119 159 IPR033467 -
Cam11g0315 592 SMART CXC_2 204 245 IPR033467 -
Cam11g0315 592 MobiDBLite consensus disorder prediction 94 118 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 1 79 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 403 419 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 16 32 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 375 450 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 375 402 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 420 434 - -
Cam11g0315 592 MobiDBLite consensus disorder prediction 44 79 - -
Cam11g0315 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 207 241 IPR005172 -
Cam11g0315 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 121 156 IPR005172 -
Cam11g0315 592 ProSiteProfiles CRC domain profile. 120 244 IPR005172 -
Cam11g0315 592 PANTHER TESMIN/TSO1-RELATED 31 520 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0315 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0864 Cam-Chr6:12389711 Cam11g0315 Cam-Chr11:4673378 7.60E-172 dispersed
Cam08g1774 Cam-Chr8:23974490 Cam11g0315 Cam-Chr11:4673378 1.20E-26 dispersed
Cam11g0315 Cam-Chr11:4673378 Cam06g0639 Cam-Chr6:8596535 2.50E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1774 . 325 450 CPP Transcription Factor Family AT3G22780 56.3 5.6e-38 156.4
Cam08g1774 . 297 450 CPP Transcription Factor Family AT4G14770 50.6 1.2e-39 161.8
Cam11g0315 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.5e-142 501.5
Cam06g0864 . 30 544 CPP Transcription Factor Family AT2G20110 50.7 1.1e-126 450.7
Cam08g1774 . 325 459 CPP Transcription Factor Family AT3G04850 51.4 1.3e-36 151.8
Cam11g0315 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cam06g0864 . 20 543 CPP Transcription Factor Family AT4G29000 53.3 3.8e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52864 PF03638 TCR 3.10E-12 No_clan Cam TF