Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0326 | ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCGCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATAGTCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCCGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACATCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGAGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA | 762 | 55.51 | MADATVPETDSGGSANSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDIVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKESVIPTALFQPLPFSW | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4794562 | 4795323 | + | CaPI482276_11g003260.1 | Cam11g0326 | 139248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0326 | 253 | ProSiteProfiles | AP2/ERF domain profile. | 56 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | SMART | rav1_2 | 56 | 119 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | Coils | Coil | 218 | 238 | - | - | |
Cam11g0326 | 253 | Pfam | AP2 domain | 55 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | MobiDBLite | consensus disorder prediction | 9 | 45 | - | - | |
Cam11g0326 | 253 | CDD | AP2 | 55 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | Gene3D | AP2/ERF domain | 56 | 114 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | PRINTS | Ethylene responsive element binding protein signature | 79 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | PRINTS | Ethylene responsive element binding protein signature | 57 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g0326 | 253 | MobiDBLite | consensus disorder prediction | 118 | 176 | - | - | |
Cam11g0326 | 253 | SUPERFAMILY | DNA-binding domain | 56 | 114 | IPR016177 | GO:0003677(InterPro) | |
Cam11g0326 | 253 | FunFam | Ethylene-responsive transcription factor 2 | 55 | 114 | - | - | |
Cam11g0326 | 253 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 40 | 201 | IPR051032 | - | |
Cam11g0326 | 253 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cam11g0326 | 253 | MobiDBLite | consensus disorder prediction | 144 | 161 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g0978 | Cam-Chr6:14925412 | Cam11g0326 | Cam-Chr11:4794562 | 9.80E-49 | dispersed | |
Cam08g0099 | Cam-Chr8:1844850 | Cam11g0326 | Cam-Chr11:4794562 | 8.40E-27 | dispersed | |
Cam09g0177 | Cam-Chr9:2557370 | Cam11g0326 | Cam-Chr11:4794562 | 4.10E-34 | dispersed | |
Cam10g0245 | Cam-Chr10:4262981 | Cam11g0326 | Cam-Chr11:4794562 | 1.30E-36 | dispersed | |
Cam11g0326 | Cam-Chr11:4794562 | Cam11g1588 | Cam-Chr11:28617496 | 2.70E-19 | dispersed | |
Cam11g0326 | Cam-Chr11:4794562 | Cam11g1537 | Cam-Chr11:28196751 | 3.10E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52865 | PF00847 | AP2 | 7.40E-13 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0326 | K09286 | - | csv:101212945 | 337.035 |