Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0326 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCGCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATAGTCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCCGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACATCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGAGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 762 55.51 MADATVPETDSGGSANSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDIVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKESVIPTALFQPLPFSW 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4794562 4795323 + CaPI482276_11g003260.1 Cam11g0326 139248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0326 253 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 SMART rav1_2 56 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 Coils Coil 218 238 - -
Cam11g0326 253 Pfam AP2 domain 55 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 MobiDBLite consensus disorder prediction 9 45 - -
Cam11g0326 253 CDD AP2 55 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g0326 253 MobiDBLite consensus disorder prediction 118 176 - -
Cam11g0326 253 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677(InterPro)
Cam11g0326 253 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Cam11g0326 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 201 IPR051032 -
Cam11g0326 253 MobiDBLite consensus disorder prediction 1 60 - -
Cam11g0326 253 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0978 Cam-Chr6:14925412 Cam11g0326 Cam-Chr11:4794562 9.80E-49 dispersed
Cam08g0099 Cam-Chr8:1844850 Cam11g0326 Cam-Chr11:4794562 8.40E-27 dispersed
Cam09g0177 Cam-Chr9:2557370 Cam11g0326 Cam-Chr11:4794562 4.10E-34 dispersed
Cam10g0245 Cam-Chr10:4262981 Cam11g0326 Cam-Chr11:4794562 1.30E-36 dispersed
Cam11g0326 Cam-Chr11:4794562 Cam11g1588 Cam-Chr11:28617496 2.70E-19 dispersed
Cam11g0326 Cam-Chr11:4794562 Cam11g1537 Cam-Chr11:28196751 3.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52865 PF00847 AP2 7.40E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0326 K09286 - csv:101212945 337.035