Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0360 ATGTTCACCATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCTTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTTTTGAAGGTGCAAAAGGTTTTCCACCTGCAATCAGTACTGATTATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCGAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTGAGTAGCTCATTAAATACCGTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCGCACACATTCAATGGTATTTCAACGTCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGCATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTAGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTGAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATTGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACGATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGACGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCATTTCCATTTGGATTAATAAAGAGACAGCAAGCTGAAAACTCCCAATATGCAAAAGTGGTAACATCAGATTTTACTAACATCACTTACACAAGGGAATCAACCTGGTGCTAA 2208 41.35 MFTMTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSFEGAKGFPPAISTDYEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSREIVGQLNSTSGLSLHGIASSGMFQSHKLSSSLNTVGKSHPAFLLANQPPHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLRGQKQQIQGGGAFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQIANQNNAICLENIGSSSTNQLNDGAPTFIHDGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINDEFGFDAQSLGSSFPFGLIKRQQAENSQYAKVVTSDFTNITYTRESTWC 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5114880 5119668 - CaPI482276_11g003600.1 Cam11g0360 139282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0360 735 Gene3D - 209 275 - -
Cam11g0360 735 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160(InterPro)
Cam11g0360 735 SUPERFAMILY CheY-like 26 152 IPR011006 -
Cam11g0360 735 MobiDBLite consensus disorder prediction 152 168 - -
Cam11g0360 735 FunFam Two-component response regulator 209 275 - -
Cam11g0360 735 SMART REC_2 27 139 IPR001789 GO:0000160(InterPro)
Cam11g0360 735 SUPERFAMILY Homeodomain-like 211 273 IPR009057 -
Cam11g0360 735 Pfam Response regulator receiver domain 29 137 IPR001789 GO:0000160(InterPro)
Cam11g0360 735 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 269 IPR006447 GO:0003677(InterPro)
Cam11g0360 735 CDD REC_typeB_ARR-like 29 143 - -
Cam11g0360 735 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 352 IPR045279 GO:0009736(InterPro)
Cam11g0360 735 MobiDBLite consensus disorder prediction 144 218 - -
Cam11g0360 735 PIRSF RR_ARR_type-B 4 699 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cam11g0360 735 Gene3D - 27 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1810 Cam-Chr5:26970754 Cam11g0360 Cam-Chr11:5114880 3.50E-109 dispersed
Cam06g1469 Cam-Chr6:26109403 Cam11g0360 Cam-Chr11:5114880 1.40E-45 dispersed
Cam06g1471 Cam-Chr6:26126488 Cam11g0360 Cam-Chr11:5114880 1.50E-49 dispersed
Cam08g2214 Cam-Chr8:27426644 Cam11g0360 Cam-Chr11:5114880 1.90E-64 dispersed
Cam09g0543 Cam-Chr9:5454036 Cam11g0360 Cam-Chr11:5114880 1.10E-20 dispersed
Cam09g1231 Cam-Chr9:13993159 Cam11g0360 Cam-Chr11:5114880 4.90E-20 dispersed
Cam10g0191 Cam-Chr10:3560519 Cam11g0360 Cam-Chr11:5114880 9.70E-18 dispersed
Cam10g1619 Cam-Chr10:29973574 Cam11g0360 Cam-Chr11:5114880 2.70E-15 dispersed
Cam11g0360 Cam-Chr11:5114880 Cam04g1240 Cam-Chr4:26417010 1.80E-15 dispersed
Cam11g0360 Cam-Chr11:5114880 Cam06g1357 Cam-Chr6:24953391 4.30E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52867 PF00072 Response_reg 1.70E-25 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0360 K14491 - csv:101203718 1194.87