Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam11g0369 | ATGGTTTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCTCAAGTTTTTGGGGTTCATGTGGAACCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATCAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGCGATCCTCTTAAGATCGATCAATCTGCTCTCACCGGCGAATCCTTACCGGTTACCAAGAACCCGGGCGACAAGGTTTTCTCTGGCTCGACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCCCTGGTGTCCACACCTTCTTTGGCAAGGCAGCTCATCTTGTTGATAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCATAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATTACCAAAAGAATGACAGCCATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAGACTGGGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAGTATTTTCAAAGAATACCGATGCAGACACATTACTTCTGCTGGCTGCAAGAGCTTCAAGAGTTGAGAACCAAGATGCTATCGATGCTTCGATCGTCGGGATGTTGGGTGATCCAAAGGAGGCAAGAGCAGGGATCACTGAGGTACATTTCTTACCTTTCAATCCTGTTGAGAAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCCGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGGTCTTCGTTCTCTAGCCGTCGCTCGTCAGACTGTTCTAGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCATCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTTGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGATGGTGTTAACGATGCCCCTGCGCTCAAGAAGGCCGACATCGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAAGTAGGGCCATCTTTCAAAGGATGAAAAACTACACAATCTATGCAGTTTCCATCACAATCCGAATCGTGTTGGGTTTCTTGCTTGTAGCTCTGATATGGAAGTTTTGA | 1920 | 45.1 | MVCHLRKEKRDFKSFGPNKLEEKKESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDKVFSGSTCKQGEIEAIVIAPGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSKNTDADTLLLLAARASRVENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVEKRTAITYIDSNGNWHRSSKGAPEQIIDLCDLKGEIRKKAHDIISNYADRGLRSLAVARQTVLEKTKESAGEPWDFVGLLPLFDPPRHDSAETIHQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKF | 639 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5179970 | 5182978 | + | CaPI482276_11g003690.1 | Cam11g0369 | 139291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam11g0369 | 639 | SUPERFAMILY | Calcium ATPase, transduction domain A | 100 | 197 | IPR008250 | - | |
| Cam11g0369 | 639 | FunFam | Plasma membrane ATPase | 100 | 184 | - | - | |
| Cam11g0369 | 639 | Gene3D | - | 34 | 111 | - | - | |
| Cam11g0369 | 639 | Gene3D | - | 158 | 301 | - | - | |
| Cam11g0369 | 639 | FunFam | Plasma membrane ATPase | 309 | 456 | - | - | |
| Cam11g0369 | 639 | PRINTS | H+-transporting ATPase (proton pump) signature | 413 | 431 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | PRINTS | H+-transporting ATPase (proton pump) signature | 556 | 572 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | PRINTS | H+-transporting ATPase (proton pump) signature | 587 | 612 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | PRINTS | H+-transporting ATPase (proton pump) signature | 528 | 544 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | SFLD | C1.7: P-type atpase like | 279 | 608 | - | - | |
| Cam11g0369 | 639 | Gene3D | - | 453 | 593 | IPR023214 | - | |
| Cam11g0369 | 639 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 11 | 636 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cam11g0369 | 639 | SUPERFAMILY | HAD-like | 293 | 603 | IPR036412 | - | |
| Cam11g0369 | 639 | NCBIfam | HAD-IC family P-type ATPase | 531 | 635 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | NCBIfam | HAD-IC family P-type ATPase | 69 | 327 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam11g0369 | 639 | CDD | P-type_ATPase_H | 13 | 639 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cam11g0369 | 639 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 13 | 639 | IPR023298 | - | |
| Cam11g0369 | 639 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 9 | 639 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cam11g0369 | 639 | Pfam | E1-E2 ATPase | 99 | 276 | - | - | |
| Cam11g0369 | 639 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 299 | 305 | IPR018303 | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 473 | 483 | - | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 556 | 575 | - | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 147 | 161 | - | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 579 | 591 | - | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 297 | 311 | - | - | |
| Cam11g0369 | 639 | PRINTS | P-type cation-transporting ATPase superfamily signature | 451 | 462 | - | - | |
| Cam11g0369 | 639 | FunFam | Plasma membrane ATPase | 448 | 604 | - | - | |
| Cam11g0369 | 639 | SMART | Cation_ATPase_N_a_2 | 6 | 55 | IPR004014 | - | |
| Cam11g0369 | 639 | Pfam | haloacid dehalogenase-like hydrolase | 293 | 570 | - | - | |
| Cam11g0369 | 639 | Pfam | Cation transporter/ATPase, N-terminus | 13 | 49 | IPR004014 | - | |
| Cam11g0369 | 639 | SFLD | p-type atpase | 279 | 608 | IPR044492 | - | |
| Cam11g0369 | 639 | Gene3D | - | 309 | 452 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam11g0369 | Cam-Chr11:5179970 | Cam11g1173 | Cam-Chr11:23061659 | 3.40E-42 | dispersed | |
| Cam11g0369 | Cam-Chr11:5179970 | Cam11g1227 | Cam-Chr11:24373159 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam11g0369 | K01535 | - | csv:101211582 | 1138.25 |