Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0381 ATGGGAATCCGTTTGCCATCGATTCTTCTTAATGCCAAGCAGATTCTGAAAATGCAAGCTATGTCGGCCAGAAATCAATCTGATGTTCCCAAAGGCCATATTGCAGTTTATGTGGGAGAGATTCAAAGGAAGAGATTTGTAGTCCCTATATCATACTTGAAGCATCCTTCTTTCGTAGATCTGCTCAATAGATCAGAAGAAGAATTTGGATTTTGCCATCCAATGGGGGGCTTGACGATTCCGTGCAAAGAAGATGCTTTCATAAATCTCACTGCTAGGCTGCACACGTCATGA 294 42.18 MGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGGLTIPCKEDAFINLTARLHTS 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5295413 5295706 - CaPI482276_11g003810.1 Cam11g0381 139303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0381 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 94 IPR003676 GO:0009733(InterPro)
Cam11g0381 97 Pfam Auxin responsive protein 13 92 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0381 K14488 - - csv:105434422 196.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0461 Cam-Chr2:5291211 Cam11g0381 Cam-Chr11:5295413 2.50E-25 dispersed
Cam11g0378 Cam-Chr11:5288565 Cam11g0381 Cam-Chr11:5295413 2.70E-47 dispersed
Cam11g0379 Cam-Chr11:5291987 Cam11g0381 Cam-Chr11:5295413 2.00E-50 dispersed
Cam11g0381 Cam-Chr11:5295413 Cam11g0395 Cam-Chr11:5346909 1.10E-40 dispersed
Cam11g0381 Cam-Chr11:5295413 Cam11g0383 Cam-Chr11:5300988 1.10E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00341 Cam11g0381 Cec11g0380 . Clacu11g0502 Cmu11g0361 Cre11g0855 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339