Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0406 ATGGCGGCCGCCACCACTTGCCTTCCTTCTCTCTCTTCCTCTTCATCTCTCTCTCATCCCACTCCCTCTCTTCAAACCCCTCTTTCCCTTTCTTCTAAAACCCTCCCAAAATCCCACTTCCCTCATTCCCTCTCCCTTCCCAATACCCACAAGCCCCTCTTCCTCGCCTCCGCCTCCTCCTCCAAATCCCCCATCTCTGATTTCTTCTCCGGCGACGACTATTCCGACGAAAAACCCCGCGAGGAGTGCGGCGTCGTTGGAATCTATGGCGACCCAGAAGCCTCTCGTCTCTGTTATTTAGCCCTTCACGCTCTCCAGCACCGTGGCCAAGAAGGCGCCGGAATCGTCTCCGTCAACGAAAACGTTCTCCAGTCCGTTACCGGCGTCGGCCTCGTCTCTGAAGTCTTCAACCAAACCAAACTCGATCAATTGCCTGGCGATTCTGCGATTGGTCATGTTCGTTACTCCACTGCTGGATCTTCTATGCTCAAGAATGTCCAACCCTTTGTTGCTGGATACCGATTTGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATCGTTCTCTTAGAGCTAAACTTGAAGACACTGGTTCTATTTTCAATACTAGTTCTGATACTGAGGTCGTTCTTCACCTTATTGCAATTTCTAAACATAGACCTTTCTTGTTGAGGATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTGGTTGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTATTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCTACATATGAAAGAGAAGTGTTTCCTGGGGAAGTTCTAGTAGTTGATAAGAATGGGATTCAATCTCTCTGTTTAATGGCTCATCCTCAGCCCAAATCTTGCATATTTGAACACATATACTTTGCTCTTCCCAACTCGGTTGTTTTCGGCCGTTCTGTCTACGAATCCCGCCGAGCATTCGGGGAGATACTCGCCACCGAAGCCCCTGTTGATTGTGATGTTGTAATTGCTGTCCCGGATTCAGGAGTAGTGGCTGCTCTTGGTTATGCAGCCAAAGCTGGGGTAGCTTTCCAACAGGGTCTCATAAGGTCTCATTATGTAGGGAGGACATTCATTGAGCCATCACAGAAGATTCGTGACTTCGGTGTGAAGCTGAAGCTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTAGTGGTTGTGGATGACTCAATTGTTAGAGGTACCACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGAGCAAAAGAAGTGCATATGAGGATAGCTAGCCCTCCAATTATAGGGTCATGTTATTATGGAGTGGACACACCAAGTTCTGAAGAACTAATCTCCAACAGGATGAGTGTGGAGGAAATAAGGGAATTTATAGGCTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTGGGAAGTGATTCTCCAAACTTTTGTTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCTAGAGAAATAAAAGTGAAAAGGGTAGGAGATTTTGTGGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGTTGGGTTCAAGCTAACAGAAATCAGAATCTTGATAATAATCTCACAGTGGAGAAAGTTGGGGGTCTCTGA 1728 45.89 MAAATTCLPSLSSSSSLSHPTPSLQTPLSLSSKTLPKSHFPHSLSLPNTHKPLFLASASSSKSPISDFFSGDDYSDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNENVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGSDSPNFCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRNQNLDNNLTVEKVGGL 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5456507 5458234 + CaPI482276_11g004060.1 Cam11g0406 139328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0406 575 CDD PRTases_typeI 345 456 IPR000836 -
Cam11g0406 575 Pfam Phosphoribosyl transferase domain 340 452 IPR000836 -
Cam11g0406 575 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 78 531 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
Cam11g0406 575 Gene3D - 342 506 IPR029057 -
Cam11g0406 575 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
Cam11g0406 575 CDD GPATase_N 83 333 IPR035584 -
Cam11g0406 575 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Cam11g0406 575 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Cam11g0406 575 MobiDBLite consensus disorder prediction 6 35 - -
Cam11g0406 575 Pfam Glutamine amidotransferase domain 163 280 IPR017932 -
Cam11g0406 575 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Cam11g0406 575 MobiDBLite consensus disorder prediction 1 35 - -
Cam11g0406 575 NCBIfam amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Cam11g0406 575 SUPERFAMILY PRTase-like 318 529 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0406 K00764 - - csv:101203840 1016.53
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Cam10g0286 . 30 180 PRT Gene Family AT1G80050 74.8 5.4e-61 230.7
Cam08g1804 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Cam08g2118 . 110 259 PRT Gene Family AT1G80050 70.7 1.8e-56 215.7
Cam08g1804 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Cam01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cam08g2118 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Cam10g0286 . 8 145 PRT Gene Family AT5G11160 71.0 4.7e-52 201.1
Cam08g2118 . 81 262 PRT Gene Family AT1G27450 82.4 9.1e-81 296.6
Cam01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Cam10g0286 . 1 180 PRT Gene Family AT1G27450 70.6 9.4e-70 260.0
Cam08g1804 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cam11g0406 . 72 556 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Cam11g0406 . 72 556 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Cam11g0406 . 27 529 PRT Gene Family AT4G38880 70.4 1.6e-199 692.6
Cam08g2118 . 81 262 PRT Gene Family AT1G27450 82.4 9.1e-81 296.6
Cam01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Cam10g0286 . 1 180 PRT Gene Family AT1G27450 70.6 9.4e-70 260.0
Cam08g1804 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cam01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Cam10g0286 . 30 180 PRT Gene Family AT1G80050 74.8 5.4e-61 230.7
Cam08g1804 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Cam08g2118 . 110 259 PRT Gene Family AT1G80050 70.7 1.8e-56 215.7
Cam01g0394 . 6 104 PRT Gene Family AT4G22570 82.8 5.1e-44 173.7
Cam10g0286 . 5 97 PRT Gene Family AT4G22570 86.0 2.5e-43 171.4
Cam08g2118 . 86 177 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Cam08g1804 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Cam01g0394 . 1 96 PRT Gene Family AT4G12440 84.4 8.3e-41 162.9
Cam10g0286 . 1 96 PRT Gene Family AT4G12440 83.3 4.1e-40 160.6
Cam08g2118 . 81 176 PRT Gene Family AT4G12440 79.2 8.6e-38 152.9
Cam08g1804 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Cam08g1804 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Cam01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cam08g2118 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Cam10g0286 . 8 145 PRT Gene Family AT5G11160 71.0 4.7e-52 201.1
Cam08g1161 . 1 186 PRT Gene Family AT1G71750 65.0 1.7e-69 259.2
Cam09g2188 . 43 495 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Cam05g1338 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Cam09g2188 . 92 508 PRT Gene Family AT3G27440 75.4 2.0e-184 642.1
Cam05g1338 . 80 482 PRT Gene Family AT3G27440 75.4 8.7e-180 626.7
Cam05g1338 . 1 482 PRT Gene Family AT3G27190 86.1 9.6e-247 849.4
Cam09g2188 . 39 494 PRT Gene Family AT3G27190 75.5 6.7e-208 720.3
Cam04g0797 . 3 288 PRT Gene Family AT3G53900 66.1 5.3e-107 384.4
Cam09g2188 . 29 495 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Cam05g1338 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Cam05g1338 . 1 482 PRT Gene Family AT5G40870 86.3 9.6e-247 849.4
Cam09g2188 . 39 497 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40