Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0424 | ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA | 573 | 52.01 | MKIRCDVCEKEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5660017 | 5660589 | - | CaPI482276_11g004240.1 | Cam11g0424 | 139346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0424 | 190 | Pfam | B-box zinc finger | 57 | 98 | IPR000315 | GO:0008270(InterPro) | |
Cam11g0424 | 190 | Pfam | B-box zinc finger | 3 | 45 | IPR000315 | GO:0008270(InterPro) | |
Cam11g0424 | 190 | Gene3D | Classic Zinc Finger | 1 | 101 | - | - | |
Cam11g0424 | 190 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 183 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cam11g0424 | 190 | SMART | bboxneu5 | 55 | 102 | IPR000315 | GO:0008270(InterPro) | |
Cam11g0424 | 190 | SMART | bboxneu5 | 4 | 46 | IPR000315 | GO:0008270(InterPro) | |
Cam11g0424 | 190 | ProSiteProfiles | Zinc finger B-box type profile. | 55 | 102 | IPR000315 | GO:0008270(InterPro) | |
Cam11g0424 | 190 | CDD | Bbox1_BBX-like | 59 | 102 | IPR049808 | - | |
Cam11g0424 | 190 | CDD | Bbox1_BBX-like | 5 | 46 | IPR049808 | - | |
Cam11g0424 | 190 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 46 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam07g1037 | Cam-Chr7:24688659 | Cam11g0424 | Cam-Chr11:5660017 | 1.70E-28 | dispersed | |
Cam09g1387 | Cam-Chr9:19845159 | Cam11g0424 | Cam-Chr11:5660017 | 5.50E-33 | dispersed | |
Cam11g0424 | Cam-Chr11:5660017 | Cam02g0502 | Cam-Chr2:5679070 | 3.40E-46 | wgd | |
Cam11g0424 | Cam-Chr11:5660017 | Cam08g1927 | Cam-Chr8:25213136 | 1.20E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52869 | PF00643 | zf-B_box | 1.60E-06 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0424 | - | - | - | 0.0 |