Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0424 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA 573 52.01 MKIRCDVCEKEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5660017 5660589 - CaPI482276_11g004240.1 Cam11g0424 139346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0424 190 Pfam B-box zinc finger 57 98 IPR000315 GO:0008270(InterPro)
Cam11g0424 190 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Cam11g0424 190 Gene3D Classic Zinc Finger 1 101 - -
Cam11g0424 190 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cam11g0424 190 SMART bboxneu5 55 102 IPR000315 GO:0008270(InterPro)
Cam11g0424 190 SMART bboxneu5 4 46 IPR000315 GO:0008270(InterPro)
Cam11g0424 190 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270(InterPro)
Cam11g0424 190 CDD Bbox1_BBX-like 59 102 IPR049808 -
Cam11g0424 190 CDD Bbox1_BBX-like 5 46 IPR049808 -
Cam11g0424 190 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1037 Cam-Chr7:24688659 Cam11g0424 Cam-Chr11:5660017 1.70E-28 dispersed
Cam09g1387 Cam-Chr9:19845159 Cam11g0424 Cam-Chr11:5660017 5.50E-33 dispersed
Cam11g0424 Cam-Chr11:5660017 Cam02g0502 Cam-Chr2:5679070 3.40E-46 wgd
Cam11g0424 Cam-Chr11:5660017 Cam08g1927 Cam-Chr8:25213136 1.20E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52869 PF00643 zf-B_box 1.60E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0424 - - - 0.0