Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0454 ATGGATAAGCTCGACGGTAGTCCTCCGATCAGCCATTTCTTCGCCGGAAACCTTACTCCAATGGCTCAGAATCTCAAGGTTCTTATCATCGGAGGAACTGGCTACATCGGAAAATTCATAGTACAAGCCAGCGCCAAAGCCGGTCATCCTACCTATGCATTGATCCGCAAGTCTTCGCTCGCAAGCCCCGCCAAGTATCGAATCATCAATCATTTCAAAAGCTTAGGGGTCAATTTTCTCTTCGGCGATCTCTTTGACAATGAAAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGATCCTATCAGCTATCAAACAAGCTGGCAATGTGAAGAGATTCTTTCCTTCTGAGTTCGGCAACGATGCAGATCATATCGATGCAGTGGAGCCAGCGAAATCAATGTATGCTGCAAAGGCTGAATTTCGTAGAGCTGTTGAGGCTGAGGGAATCCCACATACATTTGTCGTATGCAATTTCTTCGACGGTTACTTTCTAAGCAACTTGTCTCAGCCAGATGCAAGCGTCCCACCTAGAGACAAAGTCATAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACAATCCGAGCTATCGACGATCCAAGGACCCTCAACAAGATCATGTACCTTAGACCCCCAGCCAACATCTACTCAACCAATGATCTCGTCTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGGATCTACGTCCCAGAGGAGGAAGTGTTGAAGAACATCAAAGAGACTTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCTCAAGTGAAAGGATCTCAAACTAATTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCTTTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTGA 987 44.98 MDKLDGSPPISHFFAGNLTPMAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLASPAKYRIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVIILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKNIKETSYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5994686 5997214 - CaPI482276_11g004540.1 Cam11g0454 139376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0454 328 Pfam NmrA-like family 27 268 IPR008030 -
Cam11g0454 328 PANTHER PINORESINOL REDUCTASE-RELATED 26 328 IPR050608 -
Cam11g0454 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 287 IPR036291 -
Cam11g0454 328 CDD PCBER_SDR_a 26 323 IPR045312 GO:0016491(InterPro)
Cam11g0454 328 Gene3D - 174 324 - -
Cam11g0454 328 Gene3D - 26 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0454 K23050 - - csv:101209800 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0527 Cam-Chr10:7790707 Cam11g0454 Cam-Chr11:5994686 1.10E-118 dispersed
Cam11g0453 Cam-Chr11:5987561 Cam11g0454 Cam-Chr11:5994686 2.80E-137 tandem
Cam11g0454 Cam-Chr11:5994686 Cam11g0455 Cam-Chr11:5999309 2.30E-87 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00792 . . . . . . Bma05g00127 . . . . . . . . . . . . . . . . Cla11g00408 Cam11g0454 Cec11g0450 Cco11g0441 Clacu11g0579 Cmu11g0437 Cre11g0918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234