Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0460 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCCGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACCACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGAGAATAATAATAATGTTGAATGGGAGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCCGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACGACCGATTGTTCATCCTACTTTAATGAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 1017 42.28 MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSPLTEANSVVEGEIAKKRKGKKKEMKWKGRDENNNNVEWENGREKKMKGKVEEDEDEDEDEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNELGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6053509 6057392 - CaPI482276_11g004600.1 Cam11g0460 139382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0460 338 FunFam Basic helix-loop-helix transcription factor 164 236 - -
Cam11g0460 338 MobiDBLite consensus disorder prediction 1 33 - -
Cam11g0460 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983(InterPro)
Cam11g0460 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 80 277 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam11g0460 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 237 IPR036638 GO:0046983(InterPro)
Cam11g0460 338 CDD bHLH_AtBPE_like 157 243 - -
Cam11g0460 338 Coils Coil 214 234 - -
Cam11g0460 338 MobiDBLite consensus disorder prediction 118 135 - -
Cam11g0460 338 SMART finulus 173 223 IPR011598 GO:0046983(InterPro)
Cam11g0460 338 Gene3D - 164 239 IPR036638 GO:0046983(InterPro)
Cam11g0460 338 MobiDBLite consensus disorder prediction 90 117 - -
Cam11g0460 338 MobiDBLite consensus disorder prediction 80 148 - -
Cam11g0460 338 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0835 Cam-Chr9:8577032 Cam11g0460 Cam-Chr11:6053509 2.20E-33 dispersed
Cam10g1693 Cam-Chr10:30933510 Cam11g0460 Cam-Chr11:6053509 2.20E-33 dispersed
Cam11g0460 Cam-Chr11:6053509 Cam11g1687 Cam-Chr11:29543656 6.30E-11 dispersed
Cam11g0460 Cam-Chr11:6053509 Cam02g0519 Cam-Chr2:5910378 4.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52873 PF00010 HLH 2.70E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0460 - - - 0.0