Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g0481 | ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCCCCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCACTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAAGTGGATGTACAAATTCTTTGATGAAGCCTGAGTGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGCGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAAGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAATGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA | 1515 | 46.86 | MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKKQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6338641 | 6343210 | - | CaPI482276_11g004810.1 | Cam11g0481 | 139403 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g0481 | 504 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 382 | 450 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | MobiDBLite | consensus disorder prediction | 195 | 234 | - | - | |
Cam11g0481 | 504 | MobiDBLite | consensus disorder prediction | 326 | 369 | - | - | |
Cam11g0481 | 504 | ProSiteProfiles | WRKY domain profile. | 225 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | FunFam | WRKY transcription factor 33 | 377 | 443 | - | - | |
Cam11g0481 | 504 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cam11g0481 | 504 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 163 | 461 | IPR044810 | GO:0003700(InterPro) | |
Cam11g0481 | 504 | FunFam | WRKY transcription factor | 221 | 290 | - | - | |
Cam11g0481 | 504 | Gene3D | WRKY domain | 375 | 451 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | Gene3D | WRKY domain | 223 | 290 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | MobiDBLite | consensus disorder prediction | 281 | 311 | - | - | |
Cam11g0481 | 504 | SUPERFAMILY | WRKY DNA-binding domain | 227 | 289 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | Pfam | WRKY DNA -binding domain | 231 | 287 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g0481 | 504 | Pfam | WRKY DNA -binding domain | 391 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1375 | Cam-Chr6:25236521 | Cam11g0481 | Cam-Chr11:6338641 | 6.30E-39 | dispersed | |
Cam10g0374 | Cam-Chr10:6010127 | Cam11g0481 | Cam-Chr11:6338641 | 8.70E-69 | dispersed | |
Cam10g0431 | Cam-Chr10:6658452 | Cam11g0481 | Cam-Chr11:6338641 | 6.30E-72 | dispersed | |
Cam10g1134 | Cam-Chr10:24459105 | Cam11g0481 | Cam-Chr11:6338641 | 5.80E-24 | dispersed | |
Cam10g2212 | Cam-Chr10:35470895 | Cam11g0481 | Cam-Chr11:6338641 | 9.60E-66 | dispersed | |
Cam11g0481 | Cam-Chr11:6338641 | Cam11g0745 | Cam-Chr11:9273109 | 2.80E-23 | dispersed | |
Cam11g0481 | Cam-Chr11:6338641 | Cam05g2592 | Cam-Chr5:33567905 | 1.20E-119 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52874 | PF03106 | WRKY | 3.20E-25 | CL0274 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g0481 | - | - | - | 0.0 |