Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g0481 ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCCCCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCACTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAAGTGGATGTACAAATTCTTTGATGAAGCCTGAGTGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGCGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAAGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAATGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 46.86 MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKKQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6338641 6343210 - CaPI482276_11g004810.1 Cam11g0481 139403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g0481 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 MobiDBLite consensus disorder prediction 195 234 - -
Cam11g0481 504 MobiDBLite consensus disorder prediction 326 369 - -
Cam11g0481 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 FunFam WRKY transcription factor 33 377 443 - -
Cam11g0481 504 MobiDBLite consensus disorder prediction 1 32 - -
Cam11g0481 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 461 IPR044810 GO:0003700(InterPro)
Cam11g0481 504 FunFam WRKY transcription factor 221 290 - -
Cam11g0481 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 MobiDBLite consensus disorder prediction 281 311 - -
Cam11g0481 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g0481 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1375 Cam-Chr6:25236521 Cam11g0481 Cam-Chr11:6338641 6.30E-39 dispersed
Cam10g0374 Cam-Chr10:6010127 Cam11g0481 Cam-Chr11:6338641 8.70E-69 dispersed
Cam10g0431 Cam-Chr10:6658452 Cam11g0481 Cam-Chr11:6338641 6.30E-72 dispersed
Cam10g1134 Cam-Chr10:24459105 Cam11g0481 Cam-Chr11:6338641 5.80E-24 dispersed
Cam10g2212 Cam-Chr10:35470895 Cam11g0481 Cam-Chr11:6338641 9.60E-66 dispersed
Cam11g0481 Cam-Chr11:6338641 Cam11g0745 Cam-Chr11:9273109 2.80E-23 dispersed
Cam11g0481 Cam-Chr11:6338641 Cam05g2592 Cam-Chr5:33567905 1.20E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52874 PF03106 WRKY 3.20E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g0481 - - - 0.0